FastQCFastQC Report
Tue 10 May 2022
EGAF00003636809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441058
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8950.20292115776156422No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAATCTCTGCGATCTCGTATG7950.18024840270440623No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5650.1281010660729428No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA5210.11812505384779326No Hit
ATACACATCTCCGAGCCCACGAGACTCAATCTCTGCGATCTCGTATGCCG4830.10950940692607322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)