FastQCFastQC Report
Wed 27 Apr 2022
EGAF00003636929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109898
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG2240.20382536533876866No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT1380.12557098400334854No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG1370.12466104933665763No Hit
GAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCG1300.1182915066698211No Hit
GGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG1270.1155617026697483No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT1230.11192196400298458No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC1200.1091921600029118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)