FastQCFastQC Report
Tue 10 May 2022
EGAF00003636933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2293255
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30350.13234463677175018No Hit
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG28030.12222801214867077No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCCGTGAGCTCCCGCTGGT27300.1190447638836501No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC25140.10962583751043821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)