FastQCFastQC Report
Tue 10 May 2022
EGAF00003636937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558070
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10930.19585356675685844No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG8170.14639740534341572No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6850.12274445858046482No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCTTATTGTGTATCTCGTATG6370.11414338703030086No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA5590.10016664576128444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)