FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003637890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003637890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1314.130434782608695No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA33.260869565217391Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC22.1739130434782608Clontech SMART CDS Primer II A (96% over 26bp)
TCGCTATGCTGGCCAGGCTGACCTCGAACTCCTAGCCTCCTCATATGATC22.1739130434782608No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA22.1739130434782608Clontech Universal Primer Mix Long (96% over 26bp)
CCTCTGCCGCCACCGCAGCAGCCACAGGCAGAGGAGGACGAGGACGACTG22.1739130434782608No Hit
GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCAGG22.1739130434782608No Hit
TCACTACACCGAGCTTTCCTGAACCGCCCCTATCCCAGAACAACTCGGGG11.0869565217391304No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC11.0869565217391304No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAT11.0869565217391304No Hit
CACTACTTCCCATGTACTCTGCGATGATACCACTGCTTCCCATGTACTCT11.0869565217391304Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTATGGCATGGAATGGAATCAACTCGATTGCAATCGAATGGAATGGAATG11.0869565217391304No Hit
CCCATGTACTCTGCGTTGATACGACTGCTTCCCATGTACTCTGCGTTGAT11.0869565217391304Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTATGGAATGGAATGGAATCAACTCGATTGCAATCGAATGGAATGGAATG11.0869565217391304No Hit
GGGAAGCAGTGGTATCAACCAAAAAAAAAAAAAAAAAAAAAAAAAATTAC11.0869565217391304No Hit
GCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCAC11.0869565217391304No Hit
GTAAATGGGAAGGGAAATTTGGAGGGGAAATTTTCACTGTTTTTTACTCT11.0869565217391304No Hit
CATGTCGCAGGGGGATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC11.0869565217391304No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GGAAGCAGTGGTATCAACCCAAAAAAAAAAAAAAAAAAAAAAAAAGTAAA11.0869565217391304No Hit
GGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAT11.0869565217391304No Hit
GTTTTAATGGATTCAGACTCCTGCAAATATAGTTGATGAAAATATGAAAA11.0869565217391304No Hit
CAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT11.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAGTGGTATCAACGCAGAGTACCTGGGACGCAGTGGTATCAACGCAGAGT11.0869565217391304Clontech SMARTer II A Oligonucleotide (95% over 23bp)
GTACATGGGAAATTAGCGGGGCACAGTGGCTCAAGCCTGTAATCCCAGTA11.0869565217391304No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
ATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCACG11.0869565217391304No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTAAAAAACAGC11.0869565217391304No Hit
GCCTAGTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAAGAACCCTCCA11.0869565217391304No Hit
GAACTCGGATAGGTCTCAGAAAAACGAAATATAGGCTTACGGTAGGTCCG11.0869565217391304No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACATGGGAGTGGTATCAACGCAGAGTACATGGGAA11.0869565217391304Clontech SMARTer II A Oligonucleotide (95% over 23bp)
ATCTAGGGAAGGTCAAACCTTCCTCCATCTCCAGTTCATCTCCCAGTCTG11.0869565217391304No Hit
GTGCAGGGTGTCTTACTGTCCCCAGAACTACCTGAATCAGACTGCTGCCC11.0869565217391304No Hit
GCGTGGTCTTATCGAGCACAGTGTCGGCTATGAGCGCACAGTCTCGTCAT11.0869565217391304No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCCTTGAT11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACATGGGAAGCGCGTTGATACCACTGCTTCACATGT11.0869565217391304No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACCAGG11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
TAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCGCCT11.0869565217391304No Hit
AATCCTGTAACTGCTAAAGAAACTGATCCCACAATTTTAAAACTTTCCCT11.0869565217391304No Hit
GTACCAGCCCACGCGGGTGACGTCGTGTGGCGGAAGCAGCACGCCCTGGT11.0869565217391304No Hit
CCATGATCAAGTTGGCTTCATCCTTGGGCTGCAAAGCTGATTCAACATAC11.0869565217391304No Hit
GTCCAGGAGCGTCCACGCTGCAGGGAGTGAGTTACGACGGCACCACTGCC11.0869565217391304No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA11.0869565217391304No Hit
GGACTACACACGCAATGCGGAGGCCGTGCTGCAGAGCCCGGGTCTCTCCG11.0869565217391304No Hit
CTTTGAGGACTGGCCTGCCCAGATGCCTGCTGTTAAGCCAGCAGCCCCCT11.0869565217391304No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
TCACCATGTTGTCCAGGCTGGTCTCGAACTCTTGACCTCAGGTGATCCAC11.0869565217391304No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAGTGGTATCAA11.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTTGAAGAATCAATTAAATGCAGAATTAAATCCGCTTCTTTTACTTCCTC11.0869565217391304No Hit
CCTCATTCCAACTCCTACCGCGATACAGACCCACAGAGTGCCATCCCTGA11.0869565217391304No Hit
ACGCCACCCAGGCTTCCAGACAACTGCAGAATGAAAGAGTCCCTCAGAGG11.0869565217391304No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC11.0869565217391304No Hit
CATGTGTAGTGCGGCAAATAAAATACAAGATAGTGTATGAATAGTAGAAG11.0869565217391304No Hit
CAATAGAATAGCTCTATTATCAAAAAGACAAAAATTAACAAATGCTGGCA11.0869565217391304No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCCCAACAAAAACC11.0869565217391304No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC11.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACATGGGACCTTAATTCTAGGCCACAATTAACTCTAACCTGGTCTTTT11.0869565217391304No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAAAAAAAAA11.0869565217391304No Hit
CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT11.0869565217391304No Hit
AGTGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC11.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGTACATTGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT11.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACGCCACCCAGGCTTCCAGACAACTGCATAATGAAAGAGTACCTCAGAGG11.0869565217391304No Hit
ATGGTCAGTAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAACCTTT11.0869565217391304No Hit
GCGCTGGTCGTCTACCAGCTCGATAATTGGCGCAAGTTGTAGGTCGGGGG11.0869565217391304No Hit
TGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATGAAATACCTAGGA11.0869565217391304No Hit
CATTGAGGACTGGCCTGCCCAGATGCCTGCTGTTAAGCCAGCAGCCCCCT11.0869565217391304No Hit
GCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGACTAGTG11.0869565217391304No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC11.0869565217391304Clontech Universal Primer Mix Long (96% over 25bp)
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC11.0869565217391304Clontech Universal Primer Mix Long (96% over 25bp)
ATTCTATCTATACGCCAGTTTCCAGTGTATCTTATCAGGTAGAGAACACT11.0869565217391304No Hit
GAATGGAATCATTGAATGGACTCGAAAGGGATCATTACTGAATGGAATTG11.0869565217391304No Hit

[OK]Adapter Content

Adapter graph