FastQCFastQC Report
Tue 10 May 2022
EGAF00003638183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003638183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences287572
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG6020.2093388786112695No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA3510.12205638935640466No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGGTAGTTCGGATCTCGTATG3350.11649256534015828No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA3210.11162421932594273No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT3010.10466943930563476No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA2990.10397396130360397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)