FastQCFastQC Report
Tue 10 May 2022
EGAF00003638365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003638365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences718939
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCACGCCCACCAATCTCGTATG20660.2873679129940092No Hit
ATACACATCTCCGAGCCCACGAGACCCACGCCCACCAATCTCGTATGCCG14810.20599800539405985No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13350.18569030195885883No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG9770.1358947003848727No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8670.12059437587889932No Hit
ACACATCTCCGAGCCCACGAGACCCACGCCCACCAATCTCGTATGCCGTC8640.12017709430146369No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA8480.11795159255514027No Hit
CTTATACACATCTCCGAGCCCACGAGACCCACGCCCACCAATCGCGTATG7230.10056486016198869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)