FastQCFastQC Report
Tue 10 May 2022
EGAF00003638367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003638367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007602
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20150.1999797539107703No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG18560.1841997137758758No Hit
CTTATACACATCTCCGAGCCCACGAGACGCAAATGCCCTAATCTCGTATG14050.1394399772926215No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11780.11691124074783496No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA11740.1165142586060766No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10080.10003949972310497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)