FastQCFastQC Report
Tue 10 May 2022
EGAF00003638401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003638401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences758246
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCAATCCATCTAATCTCGTATG14630.19294529743645203No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14130.1863511314270039No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10050.13254273678990725No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG9610.1267398707015929No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9490.12515727085932535No Hit
ATACACATCTCCGAGCCCACGAGACTCAATCCATCTAATCTCGTATGCCG8430.11117763891929532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)