FastQCFastQC Report
Tue 10 May 2022
EGAF00003640180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2194494
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG48590.221417784692052No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCAGTGAGCTCCCGCTGGT35210.160447009652339No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT33020.15046748817722902No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC30540.13916647755701314No Hit
GTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGTAGAACTGATG29590.1348374613920111No Hit
GAGTAGCACCAGCGGCTGCGGCGGCGGAGCTCCTCCGAGGTCCGGGTCAC24200.1102759907295258No Hit
GTACATGGGAGTAGCACCAGCGGCTGCGGCGGCGGAGCTCCTCCGAGGTC23720.10808869835141952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)