FastQCFastQC Report
Wed 11 May 2022
EGAF00003640187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8568592
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGACACTTTGTATGGCAAGTGGAACCACTGGCTTGGTGGATTT127730.14906766479253533No Hit
TCCTTAGCCCCTCCACAAGGTGCTCAACAGAAATGCCCAGAGTTTTCAGA105090.12264558751309435No Hit
CTACATTTTAGGGCATTTGATCTATAATTGGTAGAACAGGTTTCAGGCAG89690.10467297310923429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)