FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003640688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2718.75No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA96.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG32.083333333333333Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGC32.083333333333333No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT32.083333333333333Clontech Universal Primer Mix Long (96% over 26bp)
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
CAACTGATGGACCCACGTTGCGAGTCCAGTAAATCAGGACGGGGATAATT21.3888888888888888No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
GGACCACCTGAAACGGGCATCGTCGCTCTTCGTTGTTCGTCGACTTCTAG21.3888888888888888No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
ACGCAGAGTACATGGGAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGC10.6944444444444444No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ATTCTATTCCAATGCATTCCATTCCGTTCAATACCATTCCATTCCATTCC10.6944444444444444No Hit
GGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGAGCTTGAAGC10.6944444444444444No Hit
AAGGAGAAGAGGAAAAGGAAGAAGGAGAAAGAAAAGGAGAAGGAAGAGGA10.6944444444444444No Hit
TTTCAAGGGAATTGACTACTAGTGGCCAGTATAACAAAGAAACCCCACTA10.6944444444444444No Hit
GTCTCCAACAAAGAGTGCAGGAATAATGAATATCCACATGCCAAAAAAAT10.6944444444444444No Hit
GTACTGAGTGGGTAAAGTGGTTTAGAGAGTCTTCTAGTTCCTCAGTACCT10.6944444444444444No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAGATTGAGTCTCGCTATGT10.6944444444444444No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG10.6944444444444444No Hit
ACTCCAGACTGGGCGACAGAGTGACACTCAGTCTCAAAGAAAGAAATAAA10.6944444444444444No Hit
CACACACACACACTCTTTCTCATCCTCTCTCCCTCTATTCCTTCCTCCAC10.6944444444444444No Hit
ACTCCTGACTGACCGCTAGAGAACCAGTACCGTGAGGGACAGGCGAAAAG10.6944444444444444No Hit
CACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATTATCTGA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GCTCCTAGTCTCTCTCTCTGTCTCCCTCCCTCTCAGTATCTGGAGTCATT10.6944444444444444No Hit
CTTCCTAGTTGGTACAGAACTGAGTGTCATGTGTCCAAAGTTAAGCTCTG10.6944444444444444No Hit
GCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTC10.6944444444444444No Hit
GGGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA10.6944444444444444Clontech Universal Primer Mix Long (95% over 23bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACCTGGGAAGCAGTGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCACGTTTATTG10.6944444444444444No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATT10.6944444444444444No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGTGGGTAAAAACCAA10.6944444444444444No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATTACTCTGCGTTGATACC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAC10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
AACATATGCAGATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCC10.6944444444444444No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGTACGG10.6944444444444444No Hit
GCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG10.6944444444444444No Hit
GCACTATGGTCCGGAATTCCTGGAGGGCTAGGTACCCAGAAAAAATCGAA10.6944444444444444No Hit
AACGCAGAGTACATGGGAGCACTATGGGAGGCTTAGGTGGGCGGATCACC10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGAGCTTTTATGACTCGGGGACTTTGCAGC10.6944444444444444No Hit
GATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTAT10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGGAAGCAGTGGTATCAACGCAGAGTACATG10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCTATGTCAAAAAAATAAAAATGAATTAAAAAAAAATGCAAAAAACCTC10.6944444444444444No Hit
ATACATGGGAACCAGTTGTATCAACGCAGAGTACATTGGAAGCAGTGGTA10.6944444444444444No Hit
CTAATGAGCCGTCCATCTAATGTATGAGCGGACACTATGCTAAGAGAGAC10.6944444444444444No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCG10.6944444444444444No Hit
GCACCACGTCGTTGAGGGCATCGTCGCGGCGATCGACGGGGTCGTTGCTA10.6944444444444444No Hit
CTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCAG10.6944444444444444No Hit
CCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGTGGCGTT10.6944444444444444No Hit
GATAACTAGTTACGCGACCCCAGAGCGGTCGGCGTCCCCCAACTTCTTAG10.6944444444444444No Hit
AGTTGGTACAGAACTGAGTGTCATGTGTCCAAAGTTAAGCTCTGCACCTG10.6944444444444444No Hit
CATGGGAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT10.6944444444444444No Hit
TCCCCCTGCTCCTAGTCTCTCTCTCTGTCTCCCTCCCTCTCAATCTCTCT10.6944444444444444No Hit
GAGTACATGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA10.6944444444444444No Hit
ATTTTGGTGATTGTTTCTTTTGCTGTACAGAAGCCTTTTAACTTGATGTG10.6944444444444444No Hit
TGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.6944444444444444No Hit
ACGCAGAGTACATGGGAGATCAAAACCAACCCGGTCCGCCCCTCTCCGGC10.6944444444444444No Hit
GTACATGGAAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAA10.6944444444444444No Hit
CGCCCTACCTTGGTTTACCTGCAGCCGCCTAGTCCTCTTCTCCTTCTCTA10.6944444444444444No Hit
AGAGGGAAGAGGAAGAAGAACGAAGAAAAGAGGAAAGAAGGAGGAGGAGA10.6944444444444444No Hit
GACTGAGAGGGAGACAGAGAGATGGAGCATAGAGGGAGACAGAGACAGAG10.6944444444444444No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ACTTTTTATTTTTTTTTTTTTTTTGTTTTTAAAACAACTTCAACACATAT10.6944444444444444No Hit
GCCCCGGACCTCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGT10.6944444444444444No Hit
GTTTCGCCTTGACCGCGGGAAGGAGACATAACGATAGCGACTCTGTCTCA10.6944444444444444No Hit
GGAAGAAGGAGAAGAAGAAAGAAGAACAAAAAAGAAGAAGGAGAAGGAAG10.6944444444444444No Hit
GTCTGATACCGAGATAGTGAGGGATGTTTTGGTGTAAAACACCATAGTGG10.6944444444444444No Hit
CGTCAGGCGGTTGAACCATGTTGATTTCCCTGCGTTTGTATAGCCGACAA10.6944444444444444No Hit
ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CAGAAATCCAATAAGAATCAGCAATTCAGGAAGAAATATGACAAGGAGTA10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTAGTAAAAA10.6944444444444444No Hit
TCTTTAAAGGCTGCAGCGTCGTCCTCAAATTTCGCACTGACCATAATGAG10.6944444444444444No Hit
CAATGTATGTGCTGTTATCGAAGCCTATGGCTGAGTATGTAACGCTATGG10.6944444444444444No Hit
AACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGAGTCACG10.6944444444444444No Hit
GTGCCCAGGTTGGTCACTGCGAATTCTCTAGCCAAGAAATGTCTAAGTAA10.6944444444444444No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG10.6944444444444444No Hit
CTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTT10.6944444444444444No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT10.6944444444444444Clontech Universal Primer Mix Long (96% over 25bp)
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG10.6944444444444444No Hit
GAGGCAGAGAGGGAGACAAAGAGACAGGTGGAGAGGGAGACAGAGAGACA10.6944444444444444No Hit
GTATGCCCCATAGTGCTCAGTGGAGTCTCTCTTAGCATAGTGTCCGCTCA10.6944444444444444No Hit
TCTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGG10.6944444444444444No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTAATAGGAGCCGATCGTGCTTGTGCGCCGGCAAAAATTTTCAGGCGAA10.6944444444444444No Hit
GTTTTCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCCAACT10.6944444444444444No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAAACCGGTCAATTATACACAT10.6944444444444444No Hit
GAGTCTCGCTCTGTCATCCAGGCTGGAGTGGAGTGGCGTGATCTCAGCTC10.6944444444444444No Hit
CATGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTGTTTTTTTTTTTT10.6944444444444444Clontech SMART CDS Primer II A (100% over 26bp)
AGGTGGTCCTCAGCGTACGGCGGGACCTCTGAGAATTGGGATACAGGACC10.6944444444444444No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC10.6944444444444444Clontech Universal Primer Mix Long (96% over 25bp)
ATAACGATCAGTACCGTTATTACTCAGCTTCAGTGCAACTCTTCCCGTGG10.6944444444444444No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA10.6944444444444444No Hit
GGTATCAACGCAGAGTACATGGGAAGCCATGCATGTCTAAGTACGCACGG10.6944444444444444No Hit
AGCATGAATTGTAGCTGACGGCAGGCCCCTAAACCCAAAAGTCGGGTTCT10.6944444444444444No Hit
GATCGCGACATATCAGCATACATGGCATACTGACAGCACGCATGACATAT10.6944444444444444No Hit
GGTGCGGTCTCAGCTGACTGTAACCTCCGCCTCCTGGGTTCGAGATTCTC10.6944444444444444No Hit

[OK]Adapter Content

Adapter graph