FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003640697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGAGTCCGTACGATGTACTGGCCGTAGCACCCTGGAATGTTGTAGGT33.3707865168539324No Hit
GACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACA22.247191011235955No Hit
CCCTTTGTCACTCTGAGAACTGAATGTGTGGGAGCAGGGCTTAGAGGTGT22.247191011235955No Hit
CCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTC22.247191011235955No Hit
ATATAATTGTCTTACTGTTTCCTTGGCTTTAAAAAATGTGCTGATCAGAC22.247191011235955No Hit
GTGCGAGCTTTGTTCTTTCGCTTTTTGCAATAAATCTTGCTACTGCTCAC22.247191011235955No Hit
TTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCC22.247191011235955No Hit
AAGAAGTGTTGCTACTCCATCTTTTATGTTTCCTGACTTACATTTGCTTA22.247191011235955No Hit
TATTTTGGAAGCACTTCCAACAAATCAACCTTGCTTGAATCTCATCCATC22.247191011235955No Hit
GAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTT22.247191011235955No Hit
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACC22.247191011235955No Hit
GCCTCTAGTGATGAGCTGGAATCTTAAGGCCTGAAATAGAGCCAGACTGC22.247191011235955No Hit
TCTTTCCTTTTAGTGAAATTTGAATCTGGGTGACAAGCAAACTGACTCTG22.247191011235955No Hit
AGCCAGAACAGCTGGTACAGGAACCACAGGTGCATGGTGTTGAAGGGCGA22.247191011235955No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT11.1235955056179776No Hit
GTCGAAAACTTCACACAATTGGAAAATAAATGTTTCTTCAATGAATAATC11.1235955056179776No Hit
AAGAAGTGTTGCTACTCCATCTTTTATGTTTCATGACTTACATTTGCTTA11.1235955056179776No Hit
CATGAGAAGAGCAAAGATTTCTTTGTGGCACTGTTTTTTTCCATTCCAAA11.1235955056179776No Hit
AAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCC11.1235955056179776No Hit
CACTGGAGTCCATTCGATGATTGCTTTTAATTCCATTCGATGATATTCCA11.1235955056179776No Hit
TTCATAGAATGTCCTCTTCTCTTACAGCTGTGGGACTAGGGAGTAAATGG11.1235955056179776No Hit
TTCTTAGCACTATGCATGCTGACACATTTTCTGGATGACAGACTAAAATA11.1235955056179776No Hit
AAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGT11.1235955056179776No Hit
GCTGAAGGCCGAGACGCTGCAGGCCGATCCGGCGCATCACTCGTGGGACT11.1235955056179776No Hit
CACACCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAG11.1235955056179776No Hit
GTGTGTCCATGAGGAGGGTTTGGGGGGGGGGGGCGGAGAGGAGGGGGGGG11.1235955056179776No Hit
GGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTC11.1235955056179776No Hit
TGAGATCCCAGGGTGGGGAAGAGCTGTCCTTCTCCTGTGAGGACCTCGTC11.1235955056179776No Hit
CTAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGACAGGTTAGTTT11.1235955056179776No Hit
GGGTGTCGGGCCTGCTTCTTCTTGCTTCGGCACCTGCACCGGGCGGCACC11.1235955056179776No Hit
ATATTGTTCCAGTCGGCAAAGAATAAGGCGGCCCGGATCGACAGGCGATC11.1235955056179776No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC11.1235955056179776No Hit
AGCTAGTGTTGGGGAAACATTTCTGGGATAAACTGTGGAGTGGAGAAGAC11.1235955056179776No Hit
GTACATGGGGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGAT11.1235955056179776No Hit
CTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAA11.1235955056179776No Hit
TGACATTGGTACTCTATTCTTCATATCAGTAATAATACAAACTCAGCCCT11.1235955056179776No Hit
GTGTGGGAGCTGAGGCTTCTTTTCAGCCTGGCAGCTGGCGAGGGCCAGGG11.1235955056179776No Hit
GCATAGGGCAGGTGGTACATCAGCTCGTCGAAGGCGATGGGCGGCGCGAG11.1235955056179776No Hit
GGTAAAATAAGAATTCGGTTATTGAACGGGCAGGCAGTTTATGCTCATCA11.1235955056179776No Hit
CCTGATCAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTGGA11.1235955056179776No Hit
GTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGCT11.1235955056179776No Hit
GCCTGGGCATCCCCGTGAACCACCTCATAGAGGGCTCCCAGAAGTGTGTG11.1235955056179776No Hit
GTTGAGAATCATCTGGGCCCCAAAACATGCTCCGACGCCTTCGCCAGCGC11.1235955056179776No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT11.1235955056179776No Hit
TCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCT11.1235955056179776No Hit
ACAGCAAACTGTGTCTGGAAATGGGGCTTGGTCAGGAAAAGCGTCGCGAC11.1235955056179776No Hit
ATGTAGACCCTGTCCGGGCTGATGCGCAGGCGCTCGGCCAGCAGGCCGCA11.1235955056179776No Hit
CGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTAC11.1235955056179776No Hit
CGCACGCACGCTCGGCGTCGACACCGTCGTCGGCTTCACGGGGTCGAGCA11.1235955056179776No Hit
ACTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGCT11.1235955056179776No Hit
GGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCC11.1235955056179776No Hit
GGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAG11.1235955056179776No Hit
ACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCATTG11.1235955056179776No Hit
ACCTTGTGATCCACCTGACTCAGCCTCCTAAAGTGCTGGGATTACAGGCG11.1235955056179776No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC11.1235955056179776No Hit
ATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA11.1235955056179776No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT11.1235955056179776No Hit
ACCCCAGCACTAAAGCCAAAGATTTCCACTGTTCTTACTCTAAGTTGGGT11.1235955056179776No Hit
CTGTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGC11.1235955056179776No Hit
CTGTGAAGGATCTCACAAGGCTCCCTCCTAGAGAGAAAGTATGCCCAGCA11.1235955056179776No Hit
GTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAAC11.1235955056179776No Hit
TTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGA11.1235955056179776No Hit
GTCTTGGTGTGCTGGCCTCGGACACGAAGGCCCCAGAAGTGACGCAGCCC11.1235955056179776No Hit
TCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACT11.1235955056179776No Hit
GCTAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATG11.1235955056179776No Hit
AGGTCCAGGTCCACCAGGATTACCAGCCTGAACACTTCGAAGAAGGTCAG11.1235955056179776No Hit
ACTTAGTCTTTATACTCAAGCATGTCTCTACAACACTGAGCACTCTTTGA11.1235955056179776No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG11.1235955056179776No Hit
GACGGAGCGTGGCGGACAGGGAGACACAGATGGTGCGGAGCGTGCGACGG11.1235955056179776No Hit
TCATGTATTGTGATGCATTTTTGTTAAGCGCATGAATGTTTAAAATTGCT11.1235955056179776No Hit
GTGCTTCAGTGGGCATTCCTGTTCCTTCACTTGGTCATGGTCTGAAGTGT11.1235955056179776No Hit
ATATCTCCACTGACTAAGAGGTGCCATCTCCTCAAAAGACCTCAATATTT11.1235955056179776No Hit
GCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGA11.1235955056179776No Hit
AGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCA11.1235955056179776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)