FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003640698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACAATTGTCATTTAACTAAGCTCAGCACCTTTCATAGGAGGCACAGAT33.3707865168539324No Hit
CAAAAGGAGAGGGAGCCATAGGTTCTCTAGATTACACTCCTGAGGAAAGA33.3707865168539324No Hit
CACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGAT22.247191011235955No Hit
CACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTT22.247191011235955No Hit
CTTCCGGTGGGCTCGTGGTCTCACTGGCTTCAGGAGTGAAGCTGCAGACC22.247191011235955No Hit
AATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTG22.247191011235955No Hit
GCATAGCTGTGTGGGATTGCCTTGCACAAGGGCACCCAGCCAAGGGGGCA22.247191011235955No Hit
CCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTG22.247191011235955No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT22.247191011235955No Hit
CCCATAGGAGGTGGCGCTCCTTAGAGCTGTGAAGGCCTCCTTCACCTGGG22.247191011235955No Hit
GTATCAACGCAGAGTACATGGGAAATAAAGGATGTGAGAGATATTAGGGA22.247191011235955No Hit
GACCCGGTGAGGCGGGGGGGCGAGCCCCGAGGGGCTCTCGCTTCTGGCGC22.247191011235955No Hit
GGACAGAAGCCTAGAGGACGGGCTGAACCGCGAGCTGCGCGAGGAGCTGG22.247191011235955No Hit
GTGCTGCACGTGGCGATCAACCACCTCACTGTCGACTCGCCGCTGCCCTG22.247191011235955No Hit
CATTCTAACTTATCCCAAGTTGTTATTACAGACTTTGTTTATTTTTAGAA22.247191011235955No Hit
GATGTCGATCCTGATGGGCTCGCCCTCCGGGGCGTCGTCACCCGGGGTGA11.1235955056179776No Hit
GGCTTCGAGGGTGCGCACCGAGCTCCAGTAGTCGTAGGCGATCTCGCTCG11.1235955056179776No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT11.1235955056179776No Hit
CTGCTGGGCCGCGTCGCGCCGCCCCCGCGCCGCGACGCGGGGCTCGAAGC11.1235955056179776No Hit
GTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGG11.1235955056179776No Hit
GCCAAAAGGGGACCTGGGGGTGTCTGGGCTGCAGAAGCGATCAGCGATGC11.1235955056179776No Hit
GACGTAGATTTGGTCTTTTCACATAGTCCCATATTTCTTGGAGGCTTTGC11.1235955056179776No Hit
ATCCCCCAGATAGTGGCTACAGAGTGAGTCTGTCTTTGGGAAATCTGGGG11.1235955056179776No Hit
GACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCATT11.1235955056179776No Hit
CCTTTAAAAAAGTAATACCAAACCATAAAGTTAAAATCTATGTATATTGA11.1235955056179776No Hit
GCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCAGAGGCTGGAG11.1235955056179776No Hit
GCCCGAAAGCGTCAGGGCCAGGGTCAACGAGGTGATCGATAGCCTGGGTG11.1235955056179776No Hit
GAGCCGTTCAGCAACGAGCTGCGCTTCTCGCCGACCCTGGCGCTGGACTG11.1235955056179776No Hit
CCCAAGATCCAACTACGAGCTTTTTAACTGCAGCAACTTTAATATACGCT11.1235955056179776No Hit
TCATAACTGGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTGGACACCC11.1235955056179776No Hit
TTTATATGCCACCGATTGCAGGACACAAGCACAGTTTTAAGAGTTGTATG11.1235955056179776No Hit
GTGAAACCCCGCCTCTACTAAAAACACAACAATTAGCTTATCATAGTGGT11.1235955056179776No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT11.1235955056179776No Hit
CTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTC11.1235955056179776No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC11.1235955056179776No Hit
ATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGG11.1235955056179776No Hit
GTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGTCCTCAGGTGTAGATGCT11.1235955056179776No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGC11.1235955056179776No Hit
GAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAG11.1235955056179776No Hit
TCTCAAAACAGGGAGTACTTCAAGATCACCCTCTACGGGAGAACCAAGGA11.1235955056179776No Hit
ATTTGTGTGTATGCTGATGATCAAAACCTGTGCCAGGCTGAATTACAGTG11.1235955056179776No Hit
CACTTCTATTGTCGGGAATTCCTGCCGAAGTGATAAATCGATCAATGGAT11.1235955056179776No Hit
TTGTGGAGCAGCACACGCCCCAGCTGCTGACCCTGGTGCCCAGGGGCTGG11.1235955056179776No Hit
GCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAG11.1235955056179776No Hit
CCCTGAGTTCGCTGTTCTGGCAGGGGTGTGCCTGGGTGCCGCCGAGGCCG11.1235955056179776No Hit
GTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGG11.1235955056179776No Hit
GTGGGTGACCATGAGGCCCACCTTGGAAAAGACAACCTACCACACAGACT11.1235955056179776No Hit
GGTTCGTCCTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAGGTTAGTT11.1235955056179776No Hit
CTGCAGTGGAGCCTGAAAAGGCTCCACATTAGGTCACCTGTGCACAGCCA11.1235955056179776No Hit
GATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCT11.1235955056179776No Hit
TAATAATGGATCATGTAATTTTAATTTTTCCAAAAAAACAGCTTTTATTT11.1235955056179776No Hit
GAGTATGGGTCAAGAATAGGAGGAAATGAAGGGATAGATGTCCCCATTCC11.1235955056179776No Hit
TATCATGGTAAGACTAATGAAAAGAAGGCTGGAGTGGCTATAAGGTAGAT11.1235955056179776No Hit
CGCTGGAGCCGCCGAAGGCCAGGACCGGGAGCCGGCGCCCCGACAACCCC11.1235955056179776No Hit
CTCTAAATAAATTATTCAGATTAGGCCATGAATGCTCATGAGTTGTGAAA11.1235955056179776No Hit
AGTGAAACTTGCGCACTCATTTCATCACCTCCTGCTGGTAAGCGGCGGTT11.1235955056179776No Hit
ACCGCGCCCGGCCTTTAGAGTTATTTTTAAAAGTTCTCTTATTATAAAGA11.1235955056179776No Hit
TACCGGGGACGCGAAACGCCCCCGATCAGCAACGCGGCCTGTTGCATTGC11.1235955056179776No Hit
AGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGG11.1235955056179776No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTGTGATGCTTGTGGTT11.1235955056179776No Hit
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACC11.1235955056179776No Hit
AGCCAGTGTGACCAGGGTGAGGGTGACAGCGAGTTTCATGGACACACCCT11.1235955056179776No Hit
GGCTGAAAAGTTCCATGGCAGCCTCATAACTGGAGGGTGTGTCCATGAGG11.1235955056179776No Hit
GGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGT11.1235955056179776No Hit
CATTCATATACCATCAATTGCTAATATGATGATTGCCAAAAGTTATTTTT11.1235955056179776No Hit
GAACGGAATTGAATGGTATCATAGAAGAGAATCCAATGTAATCATCATTG11.1235955056179776No Hit
GAGTAGACTTTCTAATGAGCGTAATATGGGAGAAAGGGCAGGGGTGGTTG11.1235955056179776No Hit
ATGCATTTCCACACACAATAACAATCCTGTTCTGTATCATCCAGAATATT11.1235955056179776No Hit
CTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGA11.1235955056179776No Hit
GAAGTGATTGGGGTCTCTGCCACTCCTGCCCCATTTATTGGCAGCCTGAT11.1235955056179776No Hit
TCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCA11.1235955056179776No Hit
GGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGC11.1235955056179776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)