FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003640717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGATATCGGTCAAGGTGAAAGCAGGAAGAGCCGCGAGCGCAGTAGCAG417.391304347826086No Hit
TACATATTCTGCCTTATTCACCAAAGAAGCCGGTAGTTTGTCCATACTGC28.695652173913043No Hit
GCGCGACCGCGATCGGCATCGACGTCACCGACAAGCTCTCGGCCGCGCTG28.695652173913043No Hit
CCCCCCTCCTCTGTGTTCTCCAGACATCCTTATACTCCTGGATGTCTGCT28.695652173913043No Hit
GCGATTGCGACTGCGGGAGTCAGCTCCTACAGCTATGCGCAACAAGCCGA28.695652173913043No Hit
GTCCGATTCGGCCCAGACGCGCTATCTGGCCGAGTTCGTGGTGGTGTTCC28.695652173913043No Hit
GCTTTACACCGAGATTCTTCGCCTGTTGAGCTACGTTCAGCGCAACTAAG28.695652173913043No Hit
CTGATGGATATGGGGGTCGACGGCATCGTCACAGATCGCCCAGACCTCAT28.695652173913043No Hit
GAGCGGGCCATTAGAGCCGTCGCGGTTGGCAGAAAAAACTCTTATGACCT14.3478260869565215No Hit
GTGACACACCTGTCAGCATGACTGACAGTTTTCAAAATTAGCCACACCAC14.3478260869565215No Hit
CTGCATCTCACCCCTAAAGGTCGTGAAATCGCAGTGGCAGTCATGCGAAA14.3478260869565215No Hit
GAACCCACACGGTGCGCGATCTCATCAAGCGCGGCGAGTTTGGCGGCCTC14.3478260869565215No Hit
GATACTGTAGGTGGCTGTGCCGTCTTTGCTGATGGTGTATTTGGCGGTAA14.3478260869565215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)