FastQCFastQC Report
Fri 10 May 2024
EGAF00003640718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Total Bases2.3 kbp
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATGCCACTCCCGGTGCAGCTCTCCCTGGCCTCCTCGAGATCCTGCGCG417.391304347826086No Hit
TAGCATGCATGAATCGTGCATAAATTTCTTGTCGAGCCCGCAAATTAGCC28.695652173913043No Hit
GCCCTTGGTTGCTTCTAAAGGGCAGCACTTTGGGCAACCGGCTGGAGCTG28.695652173913043No Hit
GTTTAATTCTTTCGCCAAGTCAGCGATAACTTTCTTTCTGGCCTGAGTTT28.695652173913043No Hit
ATGATGTTGCGGCCGTGCTCGGTCTCCAGCTGCAGACGCTCGGCCAGCAT28.695652173913043No Hit
CCCATCACCATGATCGGCATGAAGGAGACCACCGGCCCGTTGACGTCCAC28.695652173913043No Hit
CGTACGTTCACTTCGTGGACGTACGGTAGTGGCCGATAATGTCAGCCATC28.695652173913043No Hit
GACGAGGGTAGTCTTCCGTCACAGCCGCATCAGCAGAGATCCTGTCAAGC14.3478260869565215No Hit
CGTCCCACGTAGCTTTAGAGCCACAATACAACTGACTCAGTTCCTGCGCC14.3478260869565215No Hit
ACGGCGTTCACCAGCTAAACCTGGCAATCGGGCTAAAGATTCGGCCACGC14.3478260869565215No Hit
CACCTAGACCAACCGAAACCTTTATCCGATATTATTCATCTAGCCGACAA14.3478260869565215No Hit
GTTTAATTTTATGAGAAGCTGCCAAACAGTTTTCCAAACTGACTGTACCA14.3478260869565215No Hit
ATCCAGAAGGGCTGATGCCTGCCCATATGCAAAAGGGAACCCGAGGGTTC14.3478260869565215No Hit
ACGGCGTTCACCAGCTAAGCCTGGCAATCGGGCTAAAGATTCGGCCACGC14.3478260869565215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)