FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003640761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC27.6923076923076925No Hit
TGCTATGGTAGAAGAAGGCTTCTTCTCCCAGCTTCATGGCTCTAAGGAAG27.6923076923076925No Hit
GAGCAGGACTGCCGAGCTCAAGCACGGGGCCTTCAGCTTCCCCTGTCCTC13.8461538461538463No Hit
AGCAACTGGAAGGAACGGATGGGCCTCTAGTGACAGATCCAGAGACACAC13.8461538461538463No Hit
GTCTCTGATTTCTTTGTTAGTTCTTGATGCCAAAATCTCAATTAGAGTAT13.8461538461538463No Hit
GTGTCCCCTCAGAATGATATTTGGCCTCACGGGAGGACATAGCCTATGAA13.8461538461538463No Hit
CAATGACTAGGAAAAAAATAACCTCAAGTCAATTTTTAGTTTGCAGATGC13.8461538461538463No Hit
TATGCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCAC13.8461538461538463No Hit
GAGTGTCGGCCCACATTACCAAATCCCTGTGAAGAACAATTACCCATAAC13.8461538461538463No Hit
GCGCAATTCTGTGCTCGTTGTTCTGCAGCATGATGAAGTCCTGGATCCAG13.8461538461538463No Hit
TCTCCATCCTTGTCTGAGAAATGAGTATTCTGTTTCCTGGGCTTTCTACG13.8461538461538463No Hit
CCCGCGGCCGAGAGCTCCGGAGCGCGGCTTCCCCGGCCGGCTGCGCGATG13.8461538461538463No Hit
AGCATTGCCTTCTTATTTTACTTCTTTTATCTTTATAACTTTGTAAGATG13.8461538461538463No Hit
CCACTTCTCTTGCAAACTGTCTTCTATTTCCTTTCATTTGACCTAGATCG13.8461538461538463No Hit
CTTCAGGACTGAGCCCCAGCAGACTCAGCAAAAGCCAAGGCGGTGAGGAG13.8461538461538463No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTTTCTGGTTAATTCCGAT13.8461538461538463No Hit
CGCTTAACTATCTTAACAAGCTTTGAGTGCAAGAGATTGAAGAGTTCAAA13.8461538461538463No Hit
GTCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGT13.8461538461538463No Hit
GTGCATGGCCGTGCTTAGTTGGTGGAGCGATTTGTCTGGTTAAATCCGAT13.8461538461538463No Hit
AGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAACTTTGTAAGATG13.8461538461538463No Hit
ACATTTTCCCAATACTATTTTTAAGTTACATCTCATTTACCTTCGTCCTT13.8461538461538463No Hit
AGCCGTAAGTGTTTTTGTAAATCAGGGTGCGGGCTCGTGTTTTGTGGCTG13.8461538461538463No Hit
GGCATAACGGGCCAGAACATTGGCATTTTCCATGATGGCGAGGGCTGAGG13.8461538461538463No Hit
GGGAACTACCGGCTCAAGGAATACGAGAAGGCCTTAAAGTACGTCCGCGG13.8461538461538463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)