FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003640835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTAATACAGGTCAAAAATGTAAAAAGGTTATAAACCTTAACAGGAAAA31.7045454545454544No Hit
CACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGAT21.1363636363636365No Hit
GCCCACCTCGGCCTCCGAAAGTGCTGGGATTACAGGTGTGAGCCACCGCG21.1363636363636365No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG21.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTGTCTCCAGCTGGCTCCCAGGGACCACTGAAAACAGCTGGCTACCCTC21.1363636363636365No Hit
CATCTAAGCAGTCAGTTAACGACAGGGTGTGAAAAAAACAAAACAAATCA21.1363636363636365No Hit
GGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGAT21.1363636363636365No Hit
GCCCAGATTGCACCATTGCAGTCCAGCCTGAGCGACAGAGTGAGACTCTG21.1363636363636365No Hit
TCCCAAAGTGCTTGGATTACAGGCGTGAGCCACCACACACCTGGCCTGAA21.1363636363636365No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG21.1363636363636365No Hit
GAATACTAAAATATATCTATAAAGTAAGAAAACTTGGATACTGACCAGGA21.1363636363636365No Hit
ATCATACTGAATGGGCAAAAACTGGAAGCATTCTCTTTGAAAACTGGCAC21.1363636363636365No Hit
GGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCG21.1363636363636365No Hit
CGACTGGGGTCTGCAGAGGACCAGATTGTCACAGGAAGGGAACTGGGTCT21.1363636363636365No Hit
TGCAGAATGAGGGCCGAGTAGATGCAGGCGAGCTCGGAGACAGAGGCCAT21.1363636363636365No Hit
GGCACAATCTCGGATCACTGCAAGCTCTGCCTCCCGGGTTCATGCCATTC21.1363636363636365No Hit
CAACCAATGTTTAGAAAATATTTACTGAGGGAGAAAATAGTGGAAGGCTC21.1363636363636365No Hit
AAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG21.1363636363636365No Hit
GACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGC21.1363636363636365No Hit
GTTTCCAACTTTCTTTCACTTCACTTTATTATACTTTTCTAACCTAGGCT21.1363636363636365No Hit
TTTATACTCTATGAACAGCACAGGGCTCCCTTTTTAACAACTTTTTCCAC21.1363636363636365No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC21.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTCTCTT21.1363636363636365No Hit
AAATAAGTGTATGTGCATTGCTGTCTGTCTCTATTGCCAAAATCAAATAA21.1363636363636365No Hit
TTACTACTTTGACCGCGATGATGTGGCTTTGAAGAACTTTGCCAAATACT21.1363636363636365No Hit
CAGATCCTCACCGCGCCCATTCCCCATACCGACACTGCGCTGCAGCGCGA21.1363636363636365No Hit
GTGTGTAAGTGGACATTTGGAGCACTTTCCGGCCTAAGGTGAAAAAGGAA10.5681818181818182No Hit
ACGTTCTTCTCAACTTTCAAAATATAATCATGCCTTCCTAACAGTTCCCC10.5681818181818182No Hit
CATGTACTGGTACCAATTGGATCAAGATCACAATGTCAGAATGTACATAG10.5681818181818182No Hit
GGTTTGGTTTGGAAAGGCAGGACAAGTGGAAGTAGAGGCTTCCAAGTCAC10.5681818181818182No Hit
CACATCAGGAAGTGGTAATAGTATGATAACTGGTAGATATTTGTAAAATA10.5681818181818182No Hit
TCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGAC10.5681818181818182No Hit
GTGTTAGCCAGGATGGTCTCAATCTCCTGACCTTGTGATCCGCTTACTTT10.5681818181818182No Hit
TATTAAACAAAAGAGTGAGTAAAAGAATAAGCAATATAAATTCTGATAGA10.5681818181818182No Hit
GTCCAGAACTGTCTAGATATGCAACAGTCTGGATAGAGGAGGCATCTATG10.5681818181818182No Hit
CAACTAGATAATGAGCATGAGCCCCCAACAAGGGAAACCACTTCCCTCTT10.5681818181818182No Hit
GAATAAGAGGGTTTCAGAGCTGCTCTGTCAAGAGGAAAGTTCAATTCCTG10.5681818181818182No Hit
CTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTC10.5681818181818182No Hit
GTATATTTGTGTGGACAGCACTTAATTCTCCCAGCAATTATGTGTGACAA10.5681818181818182No Hit
GATATAAGACTAATTCTAGGATATTGAAAACTCAGATCAATGAAGTGGTT10.5681818181818182No Hit
AACCAGGGCTTCCCTGTAGTCCTCTTCATGCTTTATCTGCACCTCATTCC10.5681818181818182No Hit
GCAATAATGTTAGCTCATAATAGTTTCCAAAATTCATCAGAACAATGAAG10.5681818181818182No Hit
TGCCTGGGGAGTGGGCCGAGGGCCGCGCCTTGCCGGCCTGCTTGGTGGCC10.5681818181818182No Hit
GTCTCCTGTTACTCAGTGGGCCTCTGTTGACACTGCCACTGTCCCCACCC10.5681818181818182No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC10.5681818181818182No Hit
GCCCCTTGATGAGGCCCACCCCACGGGTGGTTGTACCAACCCTTACGGCA10.5681818181818182No Hit
GTTCTTCATACATGCAAAGGTAAGTTAGTTATTACAAAAGTTTTTGCTGT10.5681818181818182No Hit
AGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAA10.5681818181818182No Hit
GTGGAAAAAATGAAAGAAAAGCTTCCAGTTATCATTGACTTGAGGAACCC10.5681818181818182No Hit
GAATTGGTGGAAGTGATGGAGCAAGGAAAGGAGGGAGAGAGGGATGAAGT10.5681818181818182No Hit
CTGAATCAGTTGCACTTTACTGGTAGGAATGTATAATGTAAAACATACAC10.5681818181818182No Hit
GTTCAAGCTATTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGT10.5681818181818182No Hit
TATAAAATCTAGGGAGAAGCATTCTCAGGAACTTCTTTGTGATGTTTGCA10.5681818181818182No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAGTACC10.5681818181818182Clontech Universal Primer Mix Long (95% over 21bp)
GGAGAAACCAGAGCAGAAAAGTGGAAAATTCTAAAAATCAGAGCGCCTCT10.5681818181818182No Hit
CGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTAC10.5681818181818182No Hit
AAATAAATGCTAGCCATTAAAAATTATGGAGACTTGTGGATTATTTGGTA10.5681818181818182No Hit
CATTCGTTTCAGCACTTTGAAAGCAGAGAACAACCACTCGTGCAGAAAAA10.5681818181818182No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTAGTTTATACCACTTC10.5681818181818182No Hit
GTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGA10.5681818181818182No Hit
CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGTGCTCGCCGTATGGCAC10.5681818181818182No Hit
ATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACATCTAAGGGCATC10.5681818181818182No Hit
ATCCTGTCGCCATCGAGGTCTTCACTTCCTACTACCACCAGCTCGAGACC10.5681818181818182No Hit
GCCACGACCTGTTGGTGGCATCCGTCGTCGAAAAGGGCCAAACCACTCGA10.5681818181818182No Hit
GAATGGACTCGAAAGGGATCATTATTGAATGGAATTGAATGGAATCATCA10.5681818181818182No Hit
CAGCAGCACCCTCGCATTCGAGCTCCAAATTACTTTATACTGTTTTGTCA10.5681818181818182No Hit
TGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAA10.5681818181818182No Hit
GTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGG10.5681818181818182No Hit
GGCCATATGTGTGGGAGGGAGGGGAAGTCACATCCTGCACTCAGGCAGCT10.5681818181818182No Hit
GAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAG10.5681818181818182No Hit
ATTCAATTCATTCGATGACGATTCCATTCAATTCGTTCAATGATTCCATT10.5681818181818182No Hit
AATACATCATTTTCACTTCAGTGGCTTTTAAATCCTGCTTATGAATTTTA10.5681818181818182No Hit
CATATCAGTAGTTGCTCAGTTAATGTTAGCTATTAGCTGGCTTTAACCTG10.5681818181818182No Hit
CATGGGGTGCGGCAGGGGAAACATCTCTCCCTCCTGCCCCCGATCCCCGA10.5681818181818182No Hit
GCTGTGCAGGTTGCCCATGGTGGGCACAAAGCCGATGCGTTTGCCGGCCT10.5681818181818182No Hit
GAACTGTCTCCCTTCTTGGGGGCCGAGGGCTTCCTGGGGAAGAGGATGAG10.5681818181818182No Hit
AGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCACCTCGGCCT10.5681818181818182No Hit
ATTCTTAGGTTTGGACATTTAACATAGTTTCAAACTCCTTGGAGGCTTTG10.5681818181818182No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT10.5681818181818182No Hit
AGGTTGGGCAGAGCATTGGATTCTAGGCCAGTGAGTTTGGACTTGACCAT10.5681818181818182No Hit
GAATTTGAACAAGTTGTTGCATGGATGGAAGGTGACCAGATTCCAGCTTA10.5681818181818182No Hit
GCCTGTCATCTGTGCTACTCAGATGCTGGAGAGCATGATCAAGAAGCCCC10.5681818181818182No Hit
GCACAAAATGATGGCCTTGAATTTTATCTTCCTGCACATGATCCCCTCTG10.5681818181818182No Hit
CGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGG10.5681818181818182No Hit
AAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAA10.5681818181818182No Hit
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCCTG10.5681818181818182No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA10.5681818181818182No Hit
CTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGG10.5681818181818182No Hit
GCTACTACCAGTGTCTCTGCTATTTTTATAGTTTTATATCAGATCAAATT10.5681818181818182No Hit
TTCATGTGGGTTCTGAAAGGCAAAACAGAAATGGCCAGTGCTGGTGATGT10.5681818181818182No Hit
GGATTGCTTTATGTCCAATTATGTGGTTGATTTTAGAGTATGTGGCATAT10.5681818181818182No Hit
GACAGAGGGCAGTCATGGGACTGGTTGTGCCACGGGGAAGAAGTTGAAAA10.5681818181818182No Hit
TGTCCAGGGTAGTTACAGTTAGAAACCCAATTGACAAAGAAGTTTGGTTA10.5681818181818182No Hit
AACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT10.5681818181818182No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT10.5681818181818182Clontech SMART CDS Primer II A (100% over 26bp)
TAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGAC10.5681818181818182No Hit
CATAACAAGGAAGGATTTAAACACTTCAAGAAATTTTGCCCATCCTTCAC10.5681818181818182No Hit
ACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATCGAGATCGCCACC10.5681818181818182No Hit
AAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG10.5681818181818182No Hit
GACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGC10.5681818181818182No Hit
CACTAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGACAGGTTAGT10.5681818181818182No Hit
TCCCTCTGCCGCACCGAAGAGGCCAGCCAGTGCGGAAAGCAGCAGCAGCA10.5681818181818182No Hit
ATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTA10.5681818181818182No Hit
GCATTCCTATACACCAATAATAGACAAACAGAGAGCCAAATCATGAGTGA10.5681818181818182No Hit
AGTCAAAAGACCATCCATGTTGGAATTTTAAAGCAAGAGGATAACTTTTC10.5681818181818182No Hit
GCACTTAACTGAACTCCCAAAGGTTAAGGATAAAGAAATGATTCTAAAAG10.5681818181818182No Hit
TTTGAAGACACCAACCTGTGTGCTATCCATGCCACACATGTAACAATTAT10.5681818181818182No Hit
ATTTCATATTTGGCTAAACTAAGCTTCATAAGCAAAGGAGAAATAAAATC10.5681818181818182No Hit
CCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCGG10.5681818181818182No Hit
GGGGAAAGAATGAGGATCAACCACAAAGTCAAAGAAGGACATTGGGGTAT10.5681818181818182No Hit
GCCGGGTATCGGCATGGCCAAGTTGGACCGCTACGGCCAGGCGCTGCTCG10.5681818181818182No Hit
CACTTGTACAGAAATATGCACATAGAAGCTTTATTAGTAATAGCTGCCCC10.5681818181818182No Hit
AAGGCCGGGCATGGTGGCTCACGTCTGTAATCCCAGCACTTTGGAAGGCT10.5681818181818182No Hit
ACTCTGTGCTTGATTTACTACCATATTCTTCTGCAGGCACCTTTCATTGT10.5681818181818182No Hit
CTGTCATCGGCTGATCCAACCGTTCCTTGAGCTTGGCAGCTGGCATGAAG10.5681818181818182No Hit
GGTATCAACGCAGAGTACATGGGAAGCGTCTATGGGGAGGTGACTCATGT10.5681818181818182No Hit
AAATAAAATGATTATTTAATATTTGCTTCATATGATAAAGAAAAACTTAA10.5681818181818182No Hit
CATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTA10.5681818181818182No Hit
GACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCC10.5681818181818182No Hit
TACCTACATTGTTCCAACATGCCAGAGGCTGTTCACCTTGGAGACCTGCT10.5681818181818182No Hit
CGATTCTCTTCTTCTAGACTTCATTTTCTTTACGAAGCTCATCGATCTTT10.5681818181818182No Hit
GTACAGGTACTCGCGGCGCAGGCGGGCCTCGCGGCGCAGCGCTCAGCCCA10.5681818181818182No Hit
CACCCAGCCTGTAGCCCTGTTTTTAACAGCAAACAGGTAGAAAGAAATTG10.5681818181818182No Hit
CAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA10.5681818181818182No Hit
CTGCCTACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTAAGAGCCACCA10.5681818181818182No Hit
GGACTATCCTGTGGAATAGGAAGGTCTGTATTCCAAACACTAGGTTCTTA10.5681818181818182No Hit
GGCCGCGCGCAAGCCGATTCCCGTGATCGCCGGGCTCCTGCCCGCGTGGC10.5681818181818182No Hit
CCAGTACTGTGGGGACTATGAGCTCTTCGTGGAGGCTGTGGAACAAAACA10.5681818181818182No Hit
TTGTATTTCAGTGTGTTTTTGCAGGGGCTGGTATCATTTTTTCCTTTCCA10.5681818181818182No Hit
GCCTGGGAGTGGGGAGGTAAGGCTGGGGCTGTGGAGCTGTGGGTCTTGAC10.5681818181818182No Hit
TCGGAAACCGGTAGCGCTTGCAGCATGGCTGACCAACTGACTGAAGAGCA10.5681818181818182No Hit
GGTTCCTCTTGGTGTTAACCAGGTGTAATCTTACATTTAACCCGCACTGG10.5681818181818182No Hit
GTTTAACACCTGAACAGAGATGACCTCACACTTAACACTTTGCAGTAGTT10.5681818181818182No Hit
ACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTC10.5681818181818182No Hit
CATTCCACTTCTCTCCAACATGAAGGATCAAAAAATGTTTTTCAATGTGT10.5681818181818182No Hit
GAGTTAGAGACCAGCCTGGGCAACATAACGAGATGCTGTCTTTACCAAAA10.5681818181818182No Hit
GTTCAGGTGCAAGCTCTTTATTTCAGTTGAATCTGAGGTATAAAATAAAC10.5681818181818182No Hit
GTTTCTGCAGAATTGGAAGCCTCTCATGCACAATAAACCTTAACCACTCA10.5681818181818182No Hit
GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACG10.5681818181818182No Hit
CTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT10.5681818181818182No Hit
GAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGG10.5681818181818182No Hit
CCTCCCAGGTTCAAACAATTCTCCTGCCTCAGCCTCCCAACTAGCTGGGA10.5681818181818182No Hit
ATTCCCCACCTACACCACCCTGTTTTGAAGAACCATCCATGCTGGGATAC10.5681818181818182No Hit
CTCCTTAGCTTCCCATGGATCAGTCTCTGTACCATGTTGATTCTACCTTC10.5681818181818182No Hit
CCAGTGCGGCGAGCAGTCCGAGGTGAAGACGATCGACCGTCCGGCGCCGT10.5681818181818182No Hit
CTTTGTGATGATGGAGTTTCACTCACAGAGCTGAACATGCCTTTTGATGG10.5681818181818182No Hit
GTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGG10.5681818181818182No Hit
AAGTATTTCCTCTGTCCCCTACTCTCTTTCCTCTCCTTTGAGAACTCCAA10.5681818181818182No Hit
CTTTCGTCTACAATTAAGATGAAAAAAGGAAAATATCAAAATCCCATAGG10.5681818181818182No Hit

[WARN]Adapter Content

Adapter graph