FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003640847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCCTATCTATCTCGGTGGGACCTCCAAAAAAAAGAAAAAGGATTGGCT210.526315789473683No Hit
CCCTAATCTTATGTGAAAACACCTACTGTGGGGGAACCAGAAACCTAGCT210.526315789473683No Hit
GCACTACAGTGTGGCTGAGGGCCTCAAACCTGCTGCCCCCTCAGCCCGAA15.263157894736842No Hit
GTTGCTGACAAGGTGACACTGAACACAACAGTTTTCCTTTAATTGTAAAA15.263157894736842No Hit
ATTATTATCTGATCATTCCAAACCAACTGCTGAAACGGTAGCACCTGACA15.263157894736842No Hit
CTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGT15.263157894736842No Hit
GCGCAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCC15.263157894736842No Hit
GACGCAAGAGAAAAAATCCACTGCCTTCCAAAGAAACGATTGAACAGGAG15.263157894736842No Hit
GCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCA15.263157894736842No Hit
ACGCAGAGTACATGGGGGGAGCGGAGCTCAGGGGATGGTGCGCCCGGCAC15.263157894736842No Hit
GCATAATACTTGTCCCACAAAGACTGCAGCTCTTCCTGCCCTCCTAAGTC15.263157894736842No Hit
GCATAGCGACCATTGAGATTTGATCGGTAACAGGATGCATACCACCAGGC15.263157894736842No Hit
AGCCTATGAAGGCTGTTGCTATAGTTGCAAGCAGGAGGATAATGCCGATG15.263157894736842No Hit
GCCCCACACTTCAACAGGAGTGACACCAGGTCAGGATTTTGCAGGTCCAC15.263157894736842No Hit
GCTCAGGTCAAAGGAGATTTTGTCATCAATGCCAAATAGGGTCAGGTACT15.263157894736842No Hit
GTCACCTGCAAGAACGGGCAGGGCAACTGCTACAAGAGCAACTCCAGCAT15.263157894736842No Hit
GTGTGGGGGGAGTTCGGAGGGTGATACAAAGTGCATAAATGTGCCTCCCC15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)