FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003640979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003640979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTCACCCGTTCCGACATGAGCCCCGAGGCGCGCGAGAATGCGCAGGC43.9215686274509802No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA32.941176470588235No Hit
GGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCA21.9607843137254901No Hit
ATGATATCATGCTGAGGCGCCTTGCAAATCCGACAATTAAGATCCTCCTA21.9607843137254901No Hit
CAATATACAAATAAGAAACCTAAAGCCCAGAAAGTTGAAGTGACTTACTC21.9607843137254901No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC21.9607843137254901No Hit
CGCCAAGAGCGGCGCGGTGATATGTCGACGGGAGTGGCAGAGCTTGGCGG21.9607843137254901No Hit
GGGCGTCCCGCACCAGAAGATCGTAGCGGATGTGGTCGACGGCTGTCTCT21.9607843137254901No Hit
GCGATACACCCCGTCGCCGGTGTAGCGTTGCAGGATGTTGTCGTGGACAA21.9607843137254901No Hit
CCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCGCATCGCCGGT21.9607843137254901No Hit
CCAATGCCGAGTTCAAGGCCTTTGTCGACGCGGCCCATGCCCGTGGCATG21.9607843137254901No Hit
CTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAG21.9607843137254901No Hit
CTCTCATGCTGATTGCGACCGAAGAAGTCGGATTGAAGCTTTGGAACTCT21.9607843137254901No Hit
CCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAACAC10.9803921568627451No Hit
TCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGA10.9803921568627451No Hit
GGGGTTTACCGTGGGCTCAATGCCGGCAATCCACAGATAATTTTAGTATC10.9803921568627451No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.9803921568627451No Hit
GAATGAAAAGAAGTGCTGCTTTATGCTTAAGCCTTAAGTCTGTGCCTGTC10.9803921568627451No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAA10.9803921568627451No Hit
CTCCTTTTCTTTCTGAAAGTTTCCTTTTATGTCCATAAAATACAAATATA10.9803921568627451No Hit
TCCCCACCCTTTTCTTGATAAATTTGAGGGCCCGTTTCTCCTTGGAGACC10.9803921568627451No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.9803921568627451Clontech SMART CDS Primer II A (96% over 26bp)
GAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTAGGCTGGCAGA10.9803921568627451No Hit
GCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGG10.9803921568627451No Hit
GTGATACAGGTACTTGGACACCTTTCTGTCCTGATGCTAGCTGATACTTG10.9803921568627451No Hit
GTAAAACCACATTTCTAAATAAATGCCCCAGTTGTCATGAATTCAACTTT10.9803921568627451No Hit
ATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGC10.9803921568627451No Hit
GATTCTGACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGC10.9803921568627451No Hit
GAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCC10.9803921568627451No Hit
CTCTTCTACAATGTGAACTTGCCACTGCTCCATCAAAAGGTGGTATTCAA10.9803921568627451No Hit
ATTTTATATAGATAGTTAGATAACATCATAGAATGGCTAAGTACCTTGAC10.9803921568627451No Hit
GTTTTAGACAAAAGGAAGGAGGTTGGGACCACACTGTCTGTCTCTTATAC10.9803921568627451No Hit
TGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACA10.9803921568627451No Hit
GAAAATTTCTCAGAATCCCTTGGAAAACGAGACTTTCCATTCAGACTCCA10.9803921568627451No Hit
CAACATGGGAGCTCCCTCTGCTGGTCTGCAGTAGGTTGGTATGTTACAAA10.9803921568627451No Hit
GAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGA10.9803921568627451No Hit
AGCTGGAACCACCAGGCGCCGGCGATCGCCAGCGTGCCGCCGACCGCGAC10.9803921568627451No Hit
AGACTGGGCAGACCCGCCAGACCGGGCCGTACATGTTGCAATGTCCGGAA10.9803921568627451No Hit
GAAATATATCGCCCGCCACCCGGAGAGCGCCTGCCTATTCGGGCCGCACG10.9803921568627451No Hit
CCCAGTTCAACAGGCGCTTGTCCTTGTAGATGAGACCTTCGCGATGGAGG10.9803921568627451No Hit
GTTGTAGGCGGGGTCGGTGTGGTGCCCGTGGCGTTCCCAGTCACTGGCGC10.9803921568627451No Hit
GGTGTAGTCGCCGCCCTGGCAGGTCAGCACCACGTCGAGCCGGGCCAGCG10.9803921568627451No Hit
ATATGGGACGAGGCGCGGGGGCCTCAGATAGCGATGATGCACATTGGCGC10.9803921568627451No Hit
GAACGGGGGCGAGCACCCGGTGGATGTCGGGTTCATCGTCGATGATGAGC10.9803921568627451No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTAGCGCGCCTGCTGCCTTCCTT10.9803921568627451No Hit
CTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT10.9803921568627451No Hit
CATTTGTTCTACGATCGAGGCAGATCGACTCACAACCACCGGGAGGAGCG10.9803921568627451No Hit
CCCCGACTCAGCAGCAAGTTACCATTCTGCAGCAGCCTCCTCCACTCCAG10.9803921568627451No Hit
CGCCTGGGGGACCTCTACGAGGAGGAGATGCGGGAGCTGCGCCGGCAGGT10.9803921568627451No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG10.9803921568627451No Hit
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT10.9803921568627451No Hit
TTGTTGGAGATAAGGTCGCGCTGGTCATCCATGACTGGCTTCTGATCTTC10.9803921568627451No Hit
GTACATGGGTTTGTCTACGAATGGTTTAGCGCCAGGTTCCCCACGAACGT10.9803921568627451No Hit
CCTCACCGGGTCAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTG10.9803921568627451No Hit
CCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCGGGGT10.9803921568627451No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.9803921568627451No Hit
ACCGCGAAGGACCCGTTGCCCCTGACGGACGCCAAGGCGGAGACCGTCCA10.9803921568627451No Hit
CCCATGACGGTGCCATTTCCTTCCTTGTCAAACACCCGAAGTCCTTCGAC10.9803921568627451No Hit
CTGCTAGGGGCTTAAGCGGAGGGAGTCGAGCCAGCGTCGCCGCGATGGTG10.9803921568627451No Hit
AACCACCGCACCGACGCCTATGGCGGCGCGCCGGAGAACCGGATGCGGCT10.9803921568627451No Hit
CACCTGCACTGATCTGTGAGGAGAGTTTTACAGACTTTTCATTCCAGCCT10.9803921568627451No Hit
AGACCGGACTGGCGGCCCGCCAGGCCATGCTCCAAAGCGTTGTTGACGCT10.9803921568627451No Hit
ATTTGATTGGGTTCAAATTTGGCTGATGTCCAAATGCAGCAGAGAAGAAC10.9803921568627451No Hit
ACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTT10.9803921568627451No Hit
CTCGATCGCCGCCTCGCGGGTCAATGCCGCCATGTCCGCGCCGACATAGC10.9803921568627451No Hit
CGTCATGCTGGCGCGCACGTACCGCCACAGGGAGCCTGCGCGGTGGGACA10.9803921568627451No Hit
TTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGA10.9803921568627451No Hit
CCGCTAATACTGTCTACCAAGCTGATCCCTACAAAAATGCATATAAAAGC10.9803921568627451No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG10.9803921568627451No Hit
CACCCGGTCCGTCTCGCAGCCGCTCTGGGGCAAGTGGGAACATCAGGTGC10.9803921568627451No Hit
CTATTGTATTAAGCTTCAGCTATAAGCATCTCAGGGATTTCAGAGTTGGT10.9803921568627451No Hit
GTCCAGGGATTTGCCTTCACTCACGCCTTCCTTGATATCAAGTAGTACAA10.9803921568627451No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTAAATTGCAAAAAA10.9803921568627451No Hit
CCTCACGGGCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCCGTGTCC10.9803921568627451No Hit
CCCCGGTCTGCGCATCGAAGCTGAACCCGGCCTGCGCTAACGCGCCCTGC10.9803921568627451No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC10.9803921568627451No Hit
GTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCG10.9803921568627451No Hit
CCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATG10.9803921568627451No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA10.9803921568627451No Hit
ATCCTGGACAACCTGGCCACGATCGGCTTCTACGGGTTGCCGCTGGACTA10.9803921568627451No Hit
CTCTTTTCCAGCTCGTTGATTTTTTCCGACGCCGCATTGTACTTCGCCTG10.9803921568627451No Hit
GTACCCGCCACGGCGGAGTCGACGTCGGGACGGGGCGCCTCGACCCCCGC10.9803921568627451No Hit
CGTAGCAGGTCGGAGATGTTGCCGGTGCCGTTGCTGTCGACAAGCGAGCG10.9803921568627451No Hit
TCGTAGAGCCGCGCCGACGGCAACGCCTCGATGCCGCTGGCGATCAGGAG10.9803921568627451No Hit
CAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTATCAACG10.9803921568627451No Hit
ATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAA10.9803921568627451No Hit

[WARN]Adapter Content

Adapter graph