FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC43.149606299212598No Hit
CCTCCTCCCAGGATCAAAGGATCCTCCCACCTAAGCCTCCCAAGTAGCTG32.3622047244094486No Hit
GTGATGAATTTGCTCATAGTCATAGAAGCTAGACTTCTGGAAATAACTCC21.574803149606299No Hit
CGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA21.574803149606299No Hit
TATGGATCCATTAAAGGGAAGAATGTTGTCCAGAGGTAAAGGTGCCAACT21.574803149606299No Hit
GATATGCAGGTCTTCTCTGGGCCACAGAGCCTCACAAAACCCACTGTGAG21.574803149606299No Hit
ACGCCCGGGCGCGTCGCTTCTACGAGAAACAGGGCTGGGTCGACGAGGGC21.574803149606299No Hit
GTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCA21.574803149606299No Hit
ACAAAATATTCCTCTCCAAAATACTGGGGATGGTTGAGCTAAAAGGGTTG21.574803149606299No Hit
ATGCTTAAGGTATGTCGTGCGCTTCTGCTGCGCGTGAAAAACAAAAAACA21.574803149606299No Hit
CTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCACTA21.574803149606299No Hit
ACCTACCTCGGTGGGGTTTGCCGAGACCAAGCAGCTGATGCGGCGTCTGA21.574803149606299No Hit
CCCCAATACTATACTGCTATTTCTCTTTTAAAAACAAGCAGAATCCCAGC21.574803149606299No Hit
AACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAACACAT21.574803149606299No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT21.574803149606299No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG21.574803149606299No Hit
GCATCCCCTTAACTAAGCCTTGCCTTACCGCTCCTTTGCGGCACCCGGTA21.574803149606299No Hit
GCTGTTGAGTTGTTTGAGTTCCTCGTATGTTCTGGATATTAGTTCCTCAT21.574803149606299No Hit
CGCCAGACCGTCAATGCTGCATCGTCACAGGCGCCTCTGGTGACGACAAT21.574803149606299No Hit
GACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTC21.574803149606299No Hit
GGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCT21.574803149606299No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT10.7874015748031495No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.7874015748031495Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGA10.7874015748031495No Hit
AAAACAGGGTGGGGTCGGGGGATGACATCCAACTCAGGAGGTGTCCATGG10.7874015748031495No Hit
TCTCTCCCAGGGTACAAGAAAACTGTGTTGTTTTCAAAGTGCTCTCAGTT10.7874015748031495No Hit
GATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGGAGACTCTGTCTCAA10.7874015748031495No Hit
GTAGAGAGAATTTGCCTCTTCTTCAATTTTTTTTTTGTTTGTTTGTTTTA10.7874015748031495No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA10.7874015748031495No Hit
GTGATTCTCAAAGTCTTGGTAGGCATTCGAACTGGTCCTTTCACTTTGAG10.7874015748031495No Hit
GGGAGGATATTAGCATGAATGCCGGCACCGGAGATCCTATCGCTGTCTCT10.7874015748031495No Hit
ACCGTCCCCATCGTGGGCATTGTTGCTGGCCTGGCTGTCCTAGCAGTTGT10.7874015748031495No Hit
ATCGTGCTGACCGGGGTGGCGATCGGCTGGATCTTCGTCCGGCGCGAACG10.7874015748031495No Hit
AGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTTTCCACTAAAAA10.7874015748031495No Hit
CATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCA10.7874015748031495No Hit
CTCAAACAGACTTTTGACACCTCTCAAGTTCAGAGCTCTGATGTGGAAAG10.7874015748031495No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC10.7874015748031495No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT10.7874015748031495No Hit
GATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGAT10.7874015748031495No Hit
AACCAAGGCTACTTGTGTTTGCATAAAGCACTGGCTACTAAGCACTTACT10.7874015748031495No Hit
ATAAATGTTCCATCCTTATTTAGTTTTGTTGCCGAAAGTGAAGTCCATGA10.7874015748031495No Hit
TTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTA10.7874015748031495No Hit
ACCTCGTGCTGTGGGCGGCGGGCTGGGAGGTCCGCGGGCAGCAGCTCAAC10.7874015748031495No Hit
TTCATCAGATGCTCCTTTTTGGCAAGAAGGGCTGATGATGTCGGGCACAG10.7874015748031495No Hit
TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCG10.7874015748031495No Hit
ATGTAAACCTTTAACTGAATTTTATATGGTGGGAGGCAGGGGATCTCTAT10.7874015748031495No Hit
GTATATGAATTTGTTAATATAAAAAAATCTACTTGGAAAATTATAAAAAC10.7874015748031495No Hit
GGCACCATGCAAAATGGAATTTTACATTTTCTTTTTTCAAATTATTTTAA10.7874015748031495No Hit
CAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATAC10.7874015748031495No Hit
CATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG10.7874015748031495No Hit
TTGATGAACTTGATCTTCTTGAAGTCGGGAATGCGCGGATCGAGCTTGGC10.7874015748031495No Hit
CAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAA10.7874015748031495No Hit
ATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTT10.7874015748031495No Hit
TCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCA10.7874015748031495No Hit
ACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAAT10.7874015748031495No Hit
GTTGGGAATGCCTTCACTTGGAGGATGTGTCAGTGCAACGGTGGAAGCCT10.7874015748031495No Hit
GGTACGACGTCAGCGGCTCGCTCGACGACCTGCTCGGCCCCGACCCCGGC10.7874015748031495No Hit
CTCCCGACCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATG10.7874015748031495No Hit
GAGCAATTCGATTCAATTCCATGATGATCCTATTTGATTCAATTAGATGA10.7874015748031495No Hit
TGTTTCCCGTGTTGGGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTG10.7874015748031495No Hit
CCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATA10.7874015748031495No Hit
AGACAGAAGTTAGTAGATTGATACCCCAGAGTCCTCAGTCCTGGGAGCTC10.7874015748031495No Hit
TGTAAAAAGTGAAGTAGAGGTTCCCCTTCAAAGACACTTTCCTCCCCGTC10.7874015748031495No Hit
GAAGAACTCTGCTCTCAATCTGGTGTACCTCTAGCTTGGAGTTCCTGAGA10.7874015748031495No Hit
CTGTTAGCACTGGGAAATGTCTCAGAGCTTTACTTCTTGTTTTTGCGGGC10.7874015748031495No Hit
GGCAAGGGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCC10.7874015748031495No Hit
TCTCTCTTTAGAAAGACGCCGACATAAGGCTGGGCGAGACGAACTTTCCT10.7874015748031495No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.7874015748031495Clontech SMART CDS Primer II A (100% over 21bp)
GCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA10.7874015748031495No Hit
CTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC10.7874015748031495No Hit
GTCCCGATCGCGACGGACGGGCTGTAGCCCCCGACGAGGAGCAGCAGCGG10.7874015748031495No Hit
CATATGCTACTGGCAGGATCAACCAGGTAAGTGAAACTGCGAATTGCTCA10.7874015748031495No Hit
ATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGC10.7874015748031495No Hit
GATGTGGGTGTGGAATGGACGCGCATTCGCCCCGCCGTGGATCGTCTGCA10.7874015748031495No Hit
GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGG10.7874015748031495No Hit
ATCTTTTTAACCTAACTCTAGTCAGGCTCCTCTAAGCCCTCAGGGACCCT10.7874015748031495No Hit
GTCCTGCCAGTCGTGCTTGCTGAAGTCGCGGAACGGCACCCGGCCGACGG10.7874015748031495No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.7874015748031495No Hit
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATATCGTAAATTAAA10.7874015748031495No Hit
AGATTCCACTGTTTTGTTCAAGTTTTTACCAGAAATTGTTCACCATTTAG10.7874015748031495No Hit
GTGTTCACGTCATGGAGCACCTGGAGCCCGCCCACATTGACGGCTACGTC10.7874015748031495No Hit
CGGCGAGTCCGGCCCGGTGCCCGACGGCGCCACGCACATGCCGTGGGACC10.7874015748031495No Hit
CGGCGAGTCCGGCCCGGTGCCCGACGGCGCCACGCACCTGCCGTGGGACC10.7874015748031495No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACTGGCGCTG10.7874015748031495No Hit
GTCCCCGGCCAGTGCTAGGCTCCGACTGAAAGGGGATCAGTGATGACCAA10.7874015748031495No Hit
GGGCATTGCTATTTATTCCTCGTCGGGCTCCCTTTGACCTTTTTGAGAAC10.7874015748031495No Hit
GGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAAC10.7874015748031495No Hit
GCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC10.7874015748031495No Hit
TGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTTGGAGGTGGAGGTTGCA10.7874015748031495No Hit
CACCGCGACCTGCGGGAACGCGCCGGAGATGACCAGCAGGCCGAAGAGCA10.7874015748031495No Hit
GCTGTCGGTCGGGGGATTCAGCCTGACGGCACAGATCTTTCGTGGGTGCA10.7874015748031495No Hit
GTCTTATTTTCAACATGACTGAATCTACTGTTGTAAGCCTCAAAACTACA10.7874015748031495No Hit
GTCTCACCCTTCACGACTGTCGCATCATCGCCTCGGTACACTGCGCACCA10.7874015748031495No Hit
ACCTGTGATATCAAACTAAGGAATTGTTACCAGAAAATTGTCTCCAAGTG10.7874015748031495No Hit
ACTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAG10.7874015748031495No Hit
TCGTAGTAGTCCCGGATTACGTTGTGTTCAGGGCCGATCACCAGACAAAA10.7874015748031495No Hit
TTAGTTGATTTGAAAGTTTGTTATGAGAGAATTATGCTTTGTCAAGCCAA10.7874015748031495No Hit
GGCTTTGTCGTTGGTTAGCTGGTCCACCTGCCGGCGCAGCTCCCGCATCT10.7874015748031495No Hit
GCCTTAGAGATCGGAGCCGATGCGCTCCTCATGGGTAAGCAGGGGGTTGA10.7874015748031495No Hit
CAAATTACCCACTCCCGCCCCGGGGAGGTAGTGACGAAAAATAACAATAC10.7874015748031495No Hit
TGTCTATGGAGGGCCACTTCTTCTGTAAGTCTGTGGGGCCTCAGCATACC10.7874015748031495No Hit
CACCATGGTATGCACGGCGACTACCATCGAAAGTTGATAGTGCAGACGTT10.7874015748031495No Hit
CGTCAGATGTGTATAAGAGACAGGACCGTGAAAGCGGGGCCTCACGATCC10.7874015748031495No Hit

[OK]Adapter Content

Adapter graph