FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2974
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT180.605245460659045No Hit
GCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTG150.5043712172158709No Hit
TTTCTAGTGAGAGCCTCAAGACTGGGGATGCTCTCTGGAGCTATCTTCAT100.3362474781439139No Hit
CTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAAC90.3026227303295225No Hit
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT80.26899798251513113No Hit
GTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCA70.23537323470073976No Hit
TCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCA70.23537323470073976No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCC70.23537323470073976No Hit
ATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCAC70.23537323470073976No Hit
TAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAA60.20174848688634836No Hit
CTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCG60.20174848688634836No Hit
ATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAG60.20174848688634836No Hit
GCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACT60.20174848688634836No Hit
CCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCC60.20174848688634836No Hit
GCCCAGCAACGCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCTT60.20174848688634836No Hit
GTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAA60.20174848688634836No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.20174848688634836No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.20174848688634836No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA50.16812373907195696No Hit
GCTGTAGGGCTGGCCTAAGTCAGGCAGTTCAAGATAACATCTATCCAGTG50.16812373907195696No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGTGAGCAGG50.16812373907195696No Hit
CTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGG50.16812373907195696No Hit
GCCTCCTCCTCCAGGTTCTCCCGAAGCATCTGCAAGGTCCTCCGGTCGGT50.16812373907195696No Hit
GGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCT50.16812373907195696No Hit
CTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGG50.16812373907195696No Hit
GTGCAGACTACTTTATTAGGAAGTTGTCGATGTTTTTTCTGGAGGCCTGA40.13449899125756556No Hit
GCTTAGACGTAGGCACTGCGGGCTTGGCCTGGAAGTTGTGGACTTTTCTA40.13449899125756556No Hit
CTAGAAAAGTCCACAACTTCCAGATGGAATGCTCTCTGCAGGCCAAGCCC40.13449899125756556No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC40.13449899125756556No Hit
GCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCT40.13449899125756556No Hit
CCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGTCGTGG40.13449899125756556No Hit
CCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGC40.13449899125756556No Hit
AGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCGCCGGACTAC40.13449899125756556No Hit
ACCTACGGAGGTGGCAGCCATCTCCTTCTCGGCATCATGGCCGCCCTCAG40.13449899125756556No Hit
CACCACGACGATGAGGACCACCACCACCACCACGATAAGAAGGCGTTTCA40.13449899125756556No Hit
GTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCC40.13449899125756556No Hit
GTATTCAGCTGCGCGTAAGTCTGGCCGGTGCCATCTGTCTCCGCAATGCC40.13449899125756556No Hit
CCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCTCTGCCTGGCCCAGCTT40.13449899125756556No Hit
ATGGAGAAGGTGGCAGTGGTAACCAGGTGCTCACTCAGGGCCAGGCGTTG40.13449899125756556No Hit
GCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGC40.13449899125756556No Hit
GAGAAATAGGCTCGTTTATTTATTCATTGATCAACTGGCACTTCTTGAAA40.13449899125756556No Hit
CTGGAATAGGGCGATGGCCTCATCCACCTTCCTGAGCTCTGCTTCTGTCT40.13449899125756556No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA40.13449899125756556Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCA40.13449899125756556No Hit
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA40.13449899125756556No Hit
TCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGC40.13449899125756556No Hit
GAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTC40.13449899125756556No Hit
CTTCTCCATCGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGC40.13449899125756556No Hit
GGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCTTGACCTCGTGATC40.13449899125756556No Hit
GCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGC40.13449899125756556No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC40.13449899125756556No Hit
CCACTGACCCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCT40.13449899125756556No Hit
CCCAAGTAGCTGGGATCACAGGCGCATGCCACCAAGCCTGGCTGATTTTT40.13449899125756556No Hit
GCCCTGATGCTCTGCGAAGGGCTCTTCGTGGCAGACGTCACCGATTTCGA40.13449899125756556No Hit
GTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAA40.13449899125756556No Hit
GCATTGCTACAACTGTCCTAACCCAACTGCTGACTGCAAAACAGCCGTCA40.13449899125756556No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG40.13449899125756556No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG40.13449899125756556No Hit
CGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAG40.13449899125756556No Hit
GTATCAACGCAGAGTACATGGGAAGCTGGGCCAGGCAGAGGGGCGAGATG40.13449899125756556No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT30.10087424344317418No Hit
CCTCACTGCCTTAACCTTAACTGTTCTTCCTGGCGCTAAAAAGAGCTGTA30.10087424344317418No Hit
GTCTCAAACATGATCTGGGTCATCTTCTCGCGGTTGGCCTTGGGGTTCAG30.10087424344317418No Hit
GTACATGGGTGGTTGCAGGCGCCGAGAGGGCGGGCCAGGGCCGCACTCCG30.10087424344317418No Hit
CTCCTCCACCGTCCAAAGTAAACTTTGTCGCTCCTTCCGCGGCGCTCCCG30.10087424344317418No Hit
TTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTA30.10087424344317418No Hit
GCTTTATTCTGTTATGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTG30.10087424344317418No Hit
GTATCAACGCAGAGTACATGGGCGCGACCTCAGATCAGACGTGGCGACCC30.10087424344317418No Hit
CTGCTACACTCAGCCTCATGAGCCACTTCAGACCAGCCAGGTGTCTTCCC30.10087424344317418No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA30.10087424344317418No Hit
GGCTTTATGCTGAAGAAAAGAAAATGGCCTTTAAAAGGCTGGCACAAGCG30.10087424344317418No Hit
ATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAG30.10087424344317418No Hit
CCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGC30.10087424344317418No Hit
ATCCACGGTATTAGAAAAAAACAAGGCATTGTCTCAGTTTAGGATAAACA30.10087424344317418No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGGTCAGTGG30.10087424344317418No Hit
GCCTGGTGGTGGCTGGAGCTCAGAAATTGGGAGTGACACAGGACACCTTC30.10087424344317418No Hit
CGGTCAGTCTGCGGCAGCGGCAGCAAGACGGTGCAGTGAAGGAGAGTGGG30.10087424344317418No Hit
GGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCC30.10087424344317418No Hit
GACAAGATGATCTGCCGCAAGTGCTATGCTCGCCTTCACCCTCGTGCTGT30.10087424344317418No Hit
ATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCAT30.10087424344317418No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG30.10087424344317418No Hit
CAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAA30.10087424344317418No Hit
TGGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCC30.10087424344317418No Hit
ATACTCTGTGAAGCTGGGGCACCCAGACACCCTGAACCAGGGGGAATTCA30.10087424344317418No Hit
CCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCGCATCGCCGGT30.10087424344317418No Hit
GTCCAGGGAAGAAGAGATGTTGTCCTGACACTTGTGGCATCAAATGCCTG30.10087424344317418No Hit
CATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGC30.10087424344317418No Hit
AGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGC30.10087424344317418No Hit
AGCCAGGCGTGATGGTGTGCACATGTAGTCCCAGTTACTCGGGAGGCTGA30.10087424344317418No Hit
GCCCAAACAGGGTGCAGGGGCTCTGGCCCTGAAGAACCTGAGTGGAGTGG30.10087424344317418No Hit
GTCTTCCATCAGCCTTGCAATTTCAGCATCCTGCAGCTTCGAGCCAATGG30.10087424344317418No Hit
CATCTCGCCCCTCTGCCTGGCCCAGCTTAGACGTAGGCACTGCGGGCTTG30.10087424344317418No Hit
ATCTAATGGAATCGCATGGAATCATCATCAAATGGAATCGAATGGAATCA30.10087424344317418No Hit
TATCAACGCAGAGTACATGGGAGGGTGAGGCAGGAGAATCGCTTGAGCAT30.10087424344317418No Hit
GCCTTATGCCCTGGATCATCTTCTCCACGCCCCTGGCCGTCATTGCCTAC30.10087424344317418No Hit
GAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACC30.10087424344317418No Hit
GTCACGGGACCAGTATTGTTTCCTCATTTTTTATAAGGACACTGAAGCTT30.10087424344317418No Hit
GTGCTAACCCCTCGATGTACATAGCTTTTCTCAGCTGCCTGCGCGCCGCC30.10087424344317418No Hit
GTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC30.10087424344317418No Hit
CAACCGGATCGGTGACTGTGGAGGGCGAGCTGAGCCCTGGCCGCCGCCAC30.10087424344317418No Hit
TTTTTTTCCTGTTTTGCCCTTGTTTTCTGTCTTTCCCTCGTTTTCTAACT30.10087424344317418No Hit
ATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGG30.10087424344317418No Hit
CCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCACCACACAGGGTGCT30.10087424344317418No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG30.10087424344317418No Hit
GACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCC30.10087424344317418No Hit
GCCCTTGACCTTATCTAACTACCAGACCAACAAAGCCAAGCATGATGAGC30.10087424344317418No Hit
GCAGTGGTTATGTTGGGAAACAAGGTGGGGATGAGGAAATCAGGTTTCCA30.10087424344317418No Hit
CCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATT30.10087424344317418No Hit
GGTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATA30.10087424344317418No Hit
GTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGC30.10087424344317418No Hit
GTCTTCCTTTTCGATCCGCCATCTGCGGTGGAGCCGCCACCAAAATGCAG30.10087424344317418No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG30.10087424344317418No Hit
GCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGC30.10087424344317418No Hit
AAGCAAAGTTTTATTTAAAAGAAAATTGCTGGTTAAGGCTTTCCCCAGCT30.10087424344317418No Hit
GGTCTTTTGCAGCTTTTGCAGACGGGCAAGAAGCTGCTTCTGCCCACACC30.10087424344317418No Hit
ACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCG30.10087424344317418No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT30.10087424344317418No Hit
GGGTAAAACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGA30.10087424344317418No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG30.10087424344317418No Hit
AGGTATTGGAGGACTCCCTCCCAGCTTTGGAAGCCTCATCCGCGTGTGTG30.10087424344317418No Hit
TCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCAT30.10087424344317418No Hit
GCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTA30.10087424344317418No Hit
GCTCCAGGCGGACCAGAACTGCACGCAAGAGTGCGTCTCGGACAGCGAAT30.10087424344317418No Hit
GGCAAGAAGCTGCTTCTGCCCACACCGCAGGGACAAGCCCTGGAGAAATG30.10087424344317418No Hit
GAGGTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCG30.10087424344317418No Hit
GTGAAGCTACTGTAGAGCTATTGAGGTCCTGGAAACAAGGCGTGTCTGCT30.10087424344317418No Hit
CGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCT30.10087424344317418No Hit
ACATGGGGCAGTGCATCCTGGGTTGGCGTAGCCATGGCGTCTCGTGTCCT30.10087424344317418No Hit
CCTGAAAGACCACCGGCGCCTGCACACAGGTGAGCGGCCCTTTGCCTGTG30.10087424344317418No Hit
GTATCAACGCAGAGTACATGGGCACGGGTGACGGGGAATCAGGGTTCGAT30.10087424344317418No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT30.10087424344317418No Hit
ACGCAGAGTACATGGGACGAACGAGTCAACCGGATCGGTGACTGTGGAGG30.10087424344317418No Hit
TTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCC30.10087424344317418No Hit
GAGTACATGGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTC30.10087424344317418No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT30.10087424344317418No Hit
TTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTT30.10087424344317418No Hit
GTATACCAAGACGTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGC30.10087424344317418No Hit
GGGCAAAGGGTCTTTTGCAGCTTTTGCAGACGGGCAAGAAGCTGCTTCTG30.10087424344317418No Hit
GCATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10087424344317418No Hit
GGCTCTCACTAGAAAAGTCCACAACTTCCAGGCCAAGCCCGCAGTGCCTA30.10087424344317418No Hit
CAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG30.10087424344317418No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT30.10087424344317418No Hit
CTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTG30.10087424344317418No Hit
GTACATGGGAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAA30.10087424344317418No Hit
GTACATGGGGAGGCTGAGGTGCGTAGATCACCTGAGGTCAGGAGTTCAAG30.10087424344317418No Hit
CTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACA30.10087424344317418No Hit
CCCTATTACTTTGCAAGGGGCCCTTCAGAAGTCGCTGGGCTCAGAAGGCT30.10087424344317418No Hit
GCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGG30.10087424344317418No Hit
AACACACGGAGATGGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAG30.10087424344317418No Hit
GAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG30.10087424344317418No Hit
GAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGTGGCTC30.10087424344317418No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA30.10087424344317418No Hit
GTACAGTGGGAGAGTGAGGTGGGAGAAGAAGAGTGTCTGGTAGGTGTGCT30.10087424344317418No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT30.10087424344317418No Hit
CAATCCATCCTTTGAAGACCACCAGACCCTGCTCTCAGCGGCCCACGAGG30.10087424344317418No Hit
CTTCCAGATGGAATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTA30.10087424344317418No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.10087424344317418No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.10087424344317418No Hit
GTCTTGAGGCTCTCACTAGAAAAGTCCACAACTTCCAGATGGAATGCTCT30.10087424344317418No Hit
TCCTTCTGTCTGTTCAAGAACCAGTCTGGGATCTTGTACTGGCGTGGATT30.10087424344317418No Hit
CTCGTTGAGATGCCAGATTGCTGGCCAGGACGATGCATCCCCCAACTGTG30.10087424344317418No Hit

[OK]Adapter Content

Adapter graph