FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2974
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT140.4707464694014795No Hit
GCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTG130.4371217215870881No Hit
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT100.3362474781439139No Hit
CTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAA90.3026227303295225No Hit
CTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAAC80.26899798251513113No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA70.23537323470073976No Hit
TGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCT70.23537323470073976No Hit
GCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCAC70.23537323470073976No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.23537323470073976No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT60.20174848688634836Clontech Universal Primer Mix Long (96% over 26bp)
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA60.20174848688634836No Hit
GCTTAGACGTAGGCACTGCGGGCTTGGCCTGCAGAGAGCATTCCATCTGG60.20174848688634836No Hit
GGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCT60.20174848688634836No Hit
GGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCT50.16812373907195696No Hit
GGCTGCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACC50.16812373907195696No Hit
GAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAA50.16812373907195696No Hit
TCCCGTCTCAGCTGTTGGGAGACAGTAGGCAGGCTGAGTGGCCCAGAGCA50.16812373907195696No Hit
CCTACAAGCCAGCCCCTGGCACCTGCTGCTACATCATGAAGATAGCTCCA50.16812373907195696No Hit
CCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCTCTGCCTGGCCCAGCTT50.16812373907195696No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCC50.16812373907195696No Hit
ACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGG50.16812373907195696No Hit
GCTATGGGCCCATCGACTACAAACGGAACTTGCCGCGTCGAGGACTGTCG50.16812373907195696No Hit
GTAAAAGGCCCCGTGCGCGAGGGCGACGTGCTCACCCTTTTGGAGTCAGA50.16812373907195696No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA50.16812373907195696No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT50.16812373907195696No Hit
GAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCTGAGTGAGCACC50.16812373907195696No Hit
ATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCAC50.16812373907195696No Hit
CTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATTTGG50.16812373907195696No Hit
ATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGG40.13449899125756556No Hit
CTCCAGAACCATCTCCGTGTGTTTCTGGCTCATGTGGAGACCCATGAGCA40.13449899125756556No Hit
AGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGG40.13449899125756556No Hit
CGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCT40.13449899125756556No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA40.13449899125756556No Hit
GGGTTGCGCTGTGGCTCTGGCTTCTGATCGCTGCTCCATCCACCTGCAGC40.13449899125756556No Hit
GTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAG40.13449899125756556No Hit
GCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAA40.13449899125756556No Hit
CTCTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCA40.13449899125756556No Hit
CAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATG40.13449899125756556No Hit
GGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAG40.13449899125756556No Hit
AATCCCATGTCATCATCTGACTCTTCAGACTCCTCCTTCTTCTCATCTTT40.13449899125756556No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG40.13449899125756556Clontech Universal Primer Mix Long (96% over 26bp)
GGCGGGCGTCTGTAGTCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATGG40.13449899125756556No Hit
GTCCTTGCTTGAAGAATGCACATACTACAGACTTGGGATCTGCACCTTTA40.13449899125756556No Hit
GAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCC40.13449899125756556No Hit
GCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGC40.13449899125756556No Hit
GTTGACTATCGGTCTCGTGCCGGTATTTAGCCTTAGATGGAGTTTACCAC40.13449899125756556No Hit
GTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGC40.13449899125756556No Hit
AGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCC40.13449899125756556No Hit
GAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTC40.13449899125756556No Hit
GTATATATTTTTCAACCAGTATTTGAACAGTATGCCAAAGATCAGAAGGA40.13449899125756556No Hit
CGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCT40.13449899125756556No Hit
GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA40.13449899125756556No Hit
GTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAA40.13449899125756556No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG40.13449899125756556No Hit
CTCCTGGTGTTGACTTAGGGATGAAGGCTCCAGGCTGCTGTCAGAAATGG40.13449899125756556No Hit
GATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCC40.13449899125756556No Hit
GAAAACGTGCACATGAGCTGCCTACTCATTTTCTTCACTGCGCAGCCTGG40.13449899125756556No Hit
GTCCTGGGGTTCTCCGGTTCTCACCACCCTTGGGCCACGCCGTCTAGTCC40.13449899125756556No Hit
CCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCA40.13449899125756556No Hit
GGGCCAGGCGTTGCTGGGCTTCCGGCGCCCCAATGCTCATCTCCAGAACC40.13449899125756556No Hit
CGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA40.13449899125756556No Hit
ATCTTTACACAATGTCACGGGACCAGTATTGTTTACCCAATTTTTTATAA40.13449899125756556No Hit
TCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCC40.13449899125756556No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT30.10087424344317418No Hit
GTTCAGACTTAGGAGTAAAACAGAAAAGTGAACTAAACAGTCGCTTGGAA30.10087424344317418No Hit
CCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTACAAG30.10087424344317418No Hit
GTTTCTATTAGTGTAACATGATTGATTTAAAAACAAAACAAAACAAAACA30.10087424344317418No Hit
GGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATG30.10087424344317418No Hit
CTCCCACAATCACCACGACGATGAGGACCACCACCACCACCACGATAAGA30.10087424344317418No Hit
CTACTTCAGTGGTTCAATTTAGTGACAAAGCTATAAATGAAGCAAATCAG30.10087424344317418No Hit
CACCAGCAAAAGGCAGAAGGGCTTCCTCCCAGCCTCGGCGGCCCTGCCCC30.10087424344317418No Hit
CCACACCCATGGGCGCTATGTGCCCCCTAGCAGTACCGATCGTAGCCCCT30.10087424344317418No Hit
GGTGGCAGTGGTAACCAGGTGCTCACTCAGGGCCAGGCGTTGCTGGGCTT30.10087424344317418No Hit
CTGCGGGCTTGGCCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGA30.10087424344317418No Hit
CTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGG30.10087424344317418No Hit
CCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGC30.10087424344317418No Hit
AGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGG30.10087424344317418No Hit
GATGTGTACGATTCACTCCTTTGAGTCTTTGAATGGCAACTCAGCCCCCT30.10087424344317418No Hit
AAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCG30.10087424344317418No Hit
TCTGCTCTCTGCCCAATGATAAGGAGGGTTCCTGCCCCCAGGTGAACATT30.10087424344317418No Hit
GCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTAC30.10087424344317418No Hit
GGTAAGATCTATTCCTGTTTCATTAAGCATTTTCATTTGTTCGTTTAAAA30.10087424344317418No Hit
GGAGGAGCGCTCGCGCTGACCAGGCGCTGGGGCGTCCACTGAAGCGGGGT30.10087424344317418No Hit
GGCTGGAGTGCAGTGGCATGAGCCAAGATCGCCTCCCATGCTCAAGCGAT30.10087424344317418No Hit
CTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAA30.10087424344317418No Hit
TTCTTGGTCCAGCTTCTTCCTGGTCTGCGCGTCTGTTGTTCCCAGCGCTC30.10087424344317418No Hit
CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTC30.10087424344317418No Hit
CCGGTCGCCCGATCGATACTGAGCAACTTAACCAGATCGCTCCCCCGTCG30.10087424344317418No Hit
TCTTCATGCCCTGGGTTCTGCCCGCACGGACCCCCATCTCTGTGACTTCC30.10087424344317418No Hit
CTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCCCTGCTGCCCAGTGC30.10087424344317418No Hit
CCTCTAACGTCAAAGGAGGCATGTCGCTATACTGGCGGCACAACTGTGTA30.10087424344317418No Hit
CTTCCGTTTTTTTCCGTTTGGTGTTGATACCATTGGATTCCATTCGATGA30.10087424344317418No Hit
GTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACAC30.10087424344317418No Hit
CCCTGGCACCTGCTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCA30.10087424344317418No Hit
GATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCA30.10087424344317418No Hit
CACCTGGACTCCCTTGGCCTTCAGAGCCTCAGCCTGCTCCACAAACCCTG30.10087424344317418No Hit
GAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCG30.10087424344317418No Hit
GGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAA30.10087424344317418No Hit
CATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAA30.10087424344317418No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT30.10087424344317418No Hit
TAATAAAACACCGCCTCGGAGTAGCGGCCTTCGTGGTCGCGCTGAACCGC30.10087424344317418No Hit
GCTTAAATCATCTTTATTCAGCTCAGGAGTGGGGTGGCTGGAAGCATAAG30.10087424344317418No Hit
GCTCGGGCCTGCCCTGCACCCCCCGCGCCCCCGGCCAGGCTAGGCGTCCT30.10087424344317418No Hit
CTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCT30.10087424344317418No Hit
CAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTACTG30.10087424344317418No Hit
ATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCC30.10087424344317418No Hit
CCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGA30.10087424344317418No Hit
CATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTG30.10087424344317418No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT30.10087424344317418No Hit
CACTAGAAAAGTCCACAACTTCCAGATGGAATGCTCTCTGCAGGCCAAGC30.10087424344317418No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA30.10087424344317418Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCCATGACGGCCAGGCCAACGGCAGCCTCCGCCTCTGCCAGCTGCTGCC30.10087424344317418No Hit
ATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACCTACGCACACG30.10087424344317418No Hit
GTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGA30.10087424344317418No Hit
CTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGG30.10087424344317418No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG30.10087424344317418No Hit
GAGCGGGACAGTGCGGCGGGGAGCGACGAGCCTCGGGTGGTTCATCCCGC30.10087424344317418No Hit
GGTCAAGACTGCAGTGAACCATGATTGCACCACTGCACTCCAGCCTGGGT30.10087424344317418No Hit
GCCTGAATCCAGGGGTCGCCAGAGGCCACAGGGACCGAGGCCAGGCTTCT30.10087424344317418No Hit
TCCAGAGACCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAACT30.10087424344317418No Hit
CCTCCCTACCGCTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGAT30.10087424344317418No Hit
TTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAAT30.10087424344317418No Hit
AAAGAAAGACTCCCGAATGCGGCGCAGAACATTGGGGATTCCTTTAGTGA30.10087424344317418No Hit
GTACATGGGAGGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGG30.10087424344317418No Hit
GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA30.10087424344317418No Hit
CGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCG30.10087424344317418No Hit
GCTTCTGCCCACACCGCAGGGACAAGCCCTGGAGAAATGGGAGCTTGGGG30.10087424344317418No Hit
GCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACT30.10087424344317418No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG30.10087424344317418No Hit
CAGCAGAATATAAAGCCTGGAAGGCAGCTGGCTCCATCTGCAGAGCACTC30.10087424344317418No Hit
TCTTGGGAGTGGTGTAAGACTTCTTCTTCCTTTTCTTAGCACCACCACGA30.10087424344317418No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT30.10087424344317418No Hit
GCAGTTTGGAGACCCATGCATCAAACCAGTCCTGGGATTTCACCTTCAAA30.10087424344317418No Hit
CATTTGTCATTTTCATAGGCAGCTGGATTCTTCCTCTTGGATCTCTCGAA30.10087424344317418No Hit
GGCCGTTCTGTATTTATGTCGCCCACAGTTGCTTGTTTGTAGTGGCCATA30.10087424344317418No Hit
CATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAA30.10087424344317418No Hit
TCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGT30.10087424344317418No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC30.10087424344317418No Hit
GATTAGTGGCTGTGGCCGTGGCCACCATGACTGTGGCCGTGGCCGTGGCC30.10087424344317418No Hit
GGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCA30.10087424344317418No Hit
CTGGAAGCTCTTGAACCGGTCTCGAAGGATGTTGCCCTCGGGCTTCAGGG30.10087424344317418No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA30.10087424344317418No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.10087424344317418No Hit
ATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGT30.10087424344317418No Hit
GTGTCACTCCCAATTTCTGAGCTCCAGCCACCACCAGGCTGAGCAGTGAG30.10087424344317418No Hit
GCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGCTGGGCCTCGAT30.10087424344317418No Hit
CTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTG30.10087424344317418No Hit
TTCCCACACATGCCCATGCAACACTTCAAGTCACGCTTGCACTGGCCATC30.10087424344317418No Hit
GGAAGATGGGTTTGGATCCAGCCTCTGCCACTTGCTCTCTGGAATAATAC30.10087424344317418No Hit
GAGCAGACTGAGCGGGATTCTGCCACCGCCTATCGGATGACTGTGGAAGT30.10087424344317418No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.10087424344317418No Hit
AGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTT30.10087424344317418No Hit
GTGTGGGAAATCCTGCGTTTCCCCTGTGAAAGCTTGATTCCTGCCATATG30.10087424344317418No Hit
GTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCC30.10087424344317418No Hit
AGCAGCAGGTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAG30.10087424344317418No Hit
GGCCTGCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAG30.10087424344317418No Hit
GCCTTAACCTTAACTGTTCTTCCTGGCGCTAAAAAGAGCTGTATTTTTTA30.10087424344317418No Hit
ATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGCCGCTTTCGCTCGGG30.10087424344317418No Hit
GAATGGTGACTATGCGCCTAGTCAACCAGATGTGTGCTAGCCCGTCGAGA30.10087424344317418No Hit
GTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGT30.10087424344317418No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA30.10087424344317418No Hit
CCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCC30.10087424344317418No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.10087424344317418No Hit
GAGTAGGGAACATGGAAACACGTGACCATTGTTTCAAAGAGGCAATAGAA30.10087424344317418No Hit
GGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCC30.10087424344317418No Hit
CCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGATCGTTAT30.10087424344317418No Hit

[OK]Adapter Content

Adapter graph