FastQCFastQC Report
Fri 10 May 2024
EGAF00003641131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Total Bases3.2 kbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGCCCATAGCCAGCCCTCCGTCACCTCTTCACCGCACCCTCGGACTGC26.25No Hit
CCACCAACATGATAAGAGACAGAAAGATGGCAAACGTGATCATAAGACAA26.25No Hit
CTTACACTTTATGCACAAAATGTAGGGTTATAATAATGTTAACATGGACA26.25No Hit
GTCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCACCTG26.25No Hit
TTCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTA13.125No Hit
GAGTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGG13.125No Hit
AAATATAATTGTTAATTGTAGCTAGTTTGTTTCCTATTTCAATATCCGCT13.125No Hit
GCCTTGAAGGTTGGTGTTTGGTTCATCTTAGCATAGAACATGTGCACATA13.125No Hit
GGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAG13.125No Hit
GCCGGAAGCTTATCACAAAATACAATCGCCGGGAGCTGACGGACAAGCTT13.125No Hit
AGCTTGTGTTGTGCTGAAGGGACAGCCCTGGGTCTAGGGGAGAGAGTCCC13.125No Hit
ACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGC13.125No Hit
GGCCACAGGCACGCACCACCACACCCAACTAATTTTTTTAATTTTTTTGT13.125No Hit
ATTATAAAACAAGTTTGCAGCCTGAAATCTGTTTGAAACATTCCAAGTAA13.125No Hit
CCAATGACCTTAACTCCGCGATCGACGCTACAAAAAACTCGTCGCCGTCA13.125No Hit
CGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCC13.125No Hit
ACAAAGTCTCTGGGCTGCCAGGATTCCTCTGGCACAAATGGGAAATATTT13.125No Hit
CTATTAGACTTGAGAGGACTTGCAAGAAAGATGTTGAAATCAATGGGGTA13.125No Hit
GCACTATGGTCAGTAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAA13.125No Hit
GAGTGAATGTCCCCCATCATGTGGCCCAACTCTCCTGGCCTGGCCATCTC13.125No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC13.125No Hit
AACTACATGCCTGTGTGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGC13.125No Hit
ATGCTGCTGCCAGTGTATATAAAACAATTACCCTTGTGAAATAGAAATTC13.125No Hit
TTCCAGCAGGGTCTCACACAGCAGTCGGGCACCCTCATCCCCCAGCTCGT13.125No Hit
CCCCAGCCCCTCCGGTCTGGCAGGAAGGGGGCAGCCTGCAACCCCCAAGG13.125No Hit
ACCTCTCATAGCAAATATTTGAGAAAACAAATTTATATTCAGATTCTTAT13.125No Hit
GTGTATGGAGGGTCTAGCCTGGGTGAGTATGGAGGGTCTAGCCTGGGTGT13.125No Hit
GCCGGAAGCTTATCACAAAATACAATCGCCGGGATCTTACGGACAAGCGT13.125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)