FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGTTGGTTCTGCAGCTTCATCAGTTTCTCAGCATGTTCCCTCTCCTC26.25No Hit
GGCCCGGGCAGGGCCCGGCAGCCATGGCGGTGGAAGGAGGAATGAAATGT26.25No Hit
ATCTTAACAAGCTTTGAGTGCAAGAGATTGAAGAGTTCAAATCTGACCAA26.25No Hit
GTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTG26.25No Hit
ATAGTGCACAATTTTGGAAGGAGGAGGTTCGTATGTCCCCAGGGCGGCAT13.125No Hit
TATCTAGCAAAACATAGTCCCCCTTCTGCTCAGAGGTTATCCATAAGTGA13.125No Hit
GCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGATCT13.125No Hit
ACCATAGTCACACTGGCACTGAAAAGAAAGCGTTGCCCTGGTGATTCTTT13.125No Hit
CTCCTTCTGTTCTTCTTTTTGTTCCTCTACTTTAAGCTGTTTTGTCAATC13.125No Hit
CAGAAAGTCTGTTCCTTTTTGTAGTAAAATGAATCTTTCAAAGGTTTCCC13.125No Hit
ACATTAGATTAAGCCCATCTTTATTTCAAGGTTTTATTGACTAAGTTGAA13.125No Hit
GTGCCTCAGCTCATCGCAAGAGTAGCAGCAGCAGCGGAGACCCATCCTCT13.125No Hit
GGACTAGGCATGGTGGCTCATACCCAGCACTTTGGGAGGCTGAGGTAGAA13.125No Hit
TTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATG13.125No Hit
GTTATAACATATGTAATGACTGTCCACTCTACAAAATCTTGATCTTAGAG13.125No Hit
CGCTTAACTATCTTAACAAGCTTTGAGTGCAAGAGATTGAAGAGTTCAAA13.125No Hit
GGATATGATAAATATTTAGGTACACCCCTCCCCACCAAGAGATTGGGGGG13.125No Hit
GTGCCATACAGCAGGAATGGGAGCTGCCCCCCTGGGCACAGCTTCTGCAC13.125No Hit
ACCACACCACGCTCGCCTGGCAGTAACGCGAGCAGGGGGCGTCCCTATAC13.125No Hit
ATAGTGCACAATGGTGGAAGGAGGCGGTTCGTATGTCCCCAGGGCGGCAT13.125No Hit
TTTCTTCACTCCACTTATCTGGGTCATGAGCTGCTGCTTTTTCTTTTTCT13.125No Hit
GACTGGATCCAAATCATAACAGAAAAAGAGAAAGAAAAAAAAAGATAAGT13.125No Hit
CATCAGCTCTGCACTTCGAGTCAACCCTGCACTGGCAGAGCTCAACCTGC13.125No Hit
GTACATGGGAATGCCGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGG13.125No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC13.125No Hit
CTCCAGGACTCCGGATGTCACACATGCGTGAGTCTTGGCGTCTACACCCC13.125No Hit
CCCCAGGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTT13.125No Hit
GCTCTGATGTGTCTCTCACAGCTTGAAAAGCCTGAGACAGCTGTCTTGTG13.125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)