FastQCFastQC Report
Tue 10 May 2022
EGAF00003641171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences686420
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCC11860.17278051338830452No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA9670.14087584860580984No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA9000.13111506074997814No Hit
GTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGG8360.12179132309664638No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT8110.11814923807581365No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC8090.11785787127414703No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT8070.11756650447248042No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA7820.11392441945164766No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA7790.11348736924914776No Hit
GTCTCAGGGTGTCTCCTGGTCTGTTCCTTCACAGATACTCCCTTCTCATT7350.10707729961248215No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT7290.10620319920748231No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC7190.1047463651991492No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT7180.1046006817983159No Hit
ACCTACAGCTGTGTGGCCACCCATTCCAGCCACGGGCCCCAGGAAAGCCG7100.10343521459164942No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG7010.10212406398414965No Hit
GTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCT6990.10183269718248301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)