FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003641322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG211.11111111111111No Hit
CATTCGGACACAGGAGTCTGCGGGGCTGGCGGTCATCGACTGGGAGGACT211.11111111111111No Hit
CCTCTCTTTCCTCCGGACACCCCTTCTAATGCATCAGTCGGGCCAGCCAG15.555555555555555No Hit
GCCCCAGGGAGGGGAGGGAAAGGGACGGTGGAGACCTGGGTTAGACCAAG15.555555555555555No Hit
GTACCGCAGGAAGAGGAGCAGCCCCTGTGAAGATTGAGAGCTGCCAGAGG15.555555555555555No Hit
TGCACGAGCTGCGCGTGCTGCGGCGTTACCGGCTGCAGCGGCGGGAGGAC15.555555555555555No Hit
TCTCTTTTCTATTAAAAATAAGAACCTGGGCAGAGTGCGGCAGCTCATGC15.555555555555555No Hit
GAGTACATGGGTCCGCGTCTTCTTCGGTGGCGATCCGCGTCCTAGAAAGG15.555555555555555No Hit
GCTGAAAGACAAGTCTGAATGCTCCACTTTTTCAATTCTCTCTACATACT15.555555555555555No Hit
TTGCAGCTGAGATCGAGCACTCTGAGCTTGGCTGGCAGTCCTTTAGGCAC15.555555555555555No Hit
ATCAACACACAGCTTTCCACTGTCATTCGCCATAGAAGCCGATACCGTGA15.555555555555555No Hit
GTGTCGTAGAGGTCACACAGAGTGTCAAATTTCCACTCTTCCCTCTCCAC15.555555555555555No Hit
GGGCTGATGACAGCAGACATGTAAGGCCATGTTATGATATTTATCCATTA15.555555555555555No Hit
CTAAATGTACTTCTGGAGGACCAATCTGAGCTTTGCGAAATGGTGTAAAT15.555555555555555No Hit
GAGAGAATGGAGTTCAGTGGTGGAGGACTGCTTTTGTGAACATGAGAAAG15.555555555555555No Hit
GGCCAGGATTGCTACAGTTGTGATTGGAGGAGTTGTGGCCATGGCGGCTG15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)