FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157
Sequences flagged as poor quality0
Sequence length100
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGATCGTTGGCAACCAGCATCGCAGTGGGAACGATGCCCTCATTCAG42.547770700636943No Hit
TGCGATTACTTCCTGTTGATTTTGATGTGTGTTGCCATGCCGCGCAGCCG42.547770700636943No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA31.910828025477707Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCGAGAAGCTGCTCATCGAGGCCTGCCTCGAGCTCTTCGCCCAGGACCTG31.910828025477707No Hit
CTGCACATCCACTTCGTGGATTTCCAGTTGCTCGACCGCAACGGCCGACC31.910828025477707No Hit
AACGTGCTCTCGGCGCTGTTCTTCGGCGGCATCTCGGGCTCGGCCGTCGC31.910828025477707No Hit
CTTCGGCATAAATGGGTGCCGGGGCCCACCAGGTCTGGGCTGTCTCTTAT21.2738853503184715No Hit
AGGCGTTCCTCGACAGGTGGGGCCAGCGCGGCACGGCCCGCGGCGCCGTC21.2738853503184715No Hit
CGTTGACGCGCGCGCGCAGCGAGGCGACGCGGGCCTCTTCGCTGGCCAGC21.2738853503184715No Hit
CATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGTGGCTCGCC21.2738853503184715No Hit
GAATTAACAGTCTTTATTGGGCTCAGACCAGGAGTCCGTGGGTCTTGAGG21.2738853503184715No Hit
GTAGTCGGCGTCGCCGGGGCCGGCCCACAGCACGGTGTCGCCGGGACCGA21.2738853503184715No Hit
TCGCCATCGGTCCCGACTTCCACGGCCGCTTCGCGCTGCAGGTGTGGGAC21.2738853503184715No Hit
TCCTCGACAACGCGCCAGCGACCTGGGATCCCGACGCCGCCTTCGAGGCG21.2738853503184715No Hit
TCACCGTCCCGCAACTGATGACGGGATTCAGACTGCAACTGGGGACATAG21.2738853503184715No Hit
GTGCGGGACCAGGACGGCGATCAGCCACAGCACCGTCGAGGCGCCCGAGA21.2738853503184715No Hit
GGATCTGCGTGGTCTCCGCGATCTGCGCGGCGCCCGACCCGGAGGCCGCC21.2738853503184715No Hit
GGCGTGCGTGCGCGTGCTGGCCGAGTGGGGGTGGGACGAGCGCCCGGCGG21.2738853503184715No Hit
CCATGAAGATGACCGGGTGATGGGCGAACAGGACGACGCCAGCAAGGAAG21.2738853503184715No Hit
ACACAGAGGTGGACTGTTTCTCTACCTCCTCACATTGTGCTAACAGGGAC21.2738853503184715No Hit
CCACCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.2738853503184715Clontech Universal Primer Mix Long (96% over 26bp)
CGTCCGGGTCGACGGCGTCGTGCACTCGCTCACCGAACCGCCCACGCTCA21.2738853503184715No Hit
ATCGACAATCGCCGTCATGATGCCCGGCAGCGGCAAGGTGCACGAACCCG21.2738853503184715No Hit
AGCACATCCGGGCGAAGCTGGCCGGGTCGCGGGCCGGCGTCGCCAACCCC21.2738853503184715No Hit
GTCGTAGAAGCGGGTGCCGCCGATGACCTTGTAGGGCTGGCCGGCGCGCA21.2738853503184715No Hit
CAACAGCGCTGGGACGTGCTCGTGCAGATGGACGTCGACGGCTCCCACGA21.2738853503184715No Hit
GGATCGCGACGGCCGTCGCGTCACCCGGGGCCGAGGGCCAGGAGTACACC21.2738853503184715No Hit
CACCTGCGCGGCGAGGGCGTTGGCCTCGGCGATCTGCCGGTAGACCTCCT21.2738853503184715No Hit
AGCTCGGCCGCCGCATCCACCGGGCGCTCGAGCCCGGCGACGACCCCATC21.2738853503184715No Hit
CTTCTGCGCCGGCACCGAGAGCCACGACCTCATCGAGATCGCCTCCTGGC21.2738853503184715No Hit
TTCCCGAGCGTCACCACGGTGTGAACTATGGCACAACCAAGGCTACGGCT21.2738853503184715No Hit
CTATTACTTTGCAAGGGGCCCTTCAGAAGTCGCTGGGCTCAGAAGGCTCT21.2738853503184715No Hit
CCTGGTCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCA10.6369426751592357No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGGTGCAG10.6369426751592357No Hit
GCATCACCCCACTCCACTACGTGTTCCTCACCGGACACCACATGCTGTTC10.6369426751592357No Hit
GCTCGTAGAAGGCCGCGGCCCGGGCGTTGCCGGCCAGCACCCACAGGTAC10.6369426751592357No Hit
GCATCTACCAGGCCGCCGAGGACACCGAGGCGGCGACCGAGCTGCTGGGC10.6369426751592357No Hit
CGTGGAAGCCGTACTTGCGGATGCGGTGCTCGGCGGCGACCTGCGCGTCG10.6369426751592357No Hit
GTGCCAGACAACTGTCGCTCTTATTTCGACTCCATGCAGCATGTGCCTGC10.6369426751592357No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG10.6369426751592357No Hit
ACCGCAGCCACCTCGGCGAGCTGACCTCCCCGGAGAGCTGGGAGAAGGCC10.6369426751592357No Hit
TTACATGGGACGAGCCAGGAATCTTCAGATCCATGGCTTACCGCAGGCTG10.6369426751592357No Hit
GTCCACGGCTACGAGATGGGCCGCCTCGACGCCGTCCTTTCCACCGGGGC10.6369426751592357No Hit
GTCCAGCTGCTCGCGCTCAACGACTTCCACGGCAACCTGGAGGCGCCGAC10.6369426751592357No Hit
GTGCTGCGCCGGATGCGCCGCGGCTACCGGCAGGACCGCTACCTGGGCAT10.6369426751592357No Hit
GAGGTGCAGCTGCCACAGAGGGCCCCCACCAGGGAAATGTCTAGTGTCTA10.6369426751592357No Hit
GTCCACAGCTCGTCGGTGAGGTCGTGGCCACGGTCGGCGAGGGCGTTGGA10.6369426751592357No Hit
TCTTCGACCTGGACAAGAAGACGATTCTCCACATCCCGAACGTCAACTCG10.6369426751592357No Hit
GTCTTCCAGTAGAGTGCATAAATCCAATCCCATTATCTGCTACACACTGA10.6369426751592357No Hit
CCCGGCGGGCGTCGGTGTAGTTCTCCAGCAGCGGCTTGAGCTGGACCCCC10.6369426751592357No Hit
GACCTTGATCGAGGAGATGTCGGTGCGGGCGCCGCGGTCACCCCGGGCGA10.6369426751592357No Hit
ACCTTGCGCATGGTGATCTGACCGGACGCCAGCAGGGCCCAGAACAGCAT10.6369426751592357No Hit
GTTATCTGTTCAACCAATCAAATTCCAATGCTTATTAGAAGGAAAGAAAC10.6369426751592357No Hit
GGGGTACGACTTGCTGACGTCGGTGAGCTGGATGTGTGGCATGGCGCTCT10.6369426751592357No Hit
TGATCAACGCGCGCACCGACGCCTTCGCGCGGCCGGAGCTGCACGGCGGC10.6369426751592357No Hit
CGCTGCAGGATGACCCGCCGCCGGTGACGAGCGAAGGCTAGGCGTCGTGC10.6369426751592357No Hit
CTCCGAGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.6369426751592357No Hit
TGCCCATGGAGGGGCCGGCGGCGTGGACCTGCTCACCGGGGCAGAGCTCA10.6369426751592357No Hit
GCCATCGACTCCTCGGTGCCGACGCACTCGAGCACGGCATCCGCGCCGAC10.6369426751592357No Hit
ACCGGGCCGGCGACTTCGAGAGCCGCTGGAACGACAAGCGCGTCGACCTC10.6369426751592357No Hit
CCATGGACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.6369426751592357No Hit
GCCACAGCGTGCCCGAGCCGATCGCGGCGGTGATCACGGCCGCCCAGGCC10.6369426751592357No Hit
GGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCATGAATG10.6369426751592357No Hit
TCGGTCAGCACCCGGTCGATGACCCCGAGCGTGTCGTAGCCGGTGGTGCC10.6369426751592357No Hit
AACCAGGAGGTGCTGGACGGCCTGCAGGAGGTCGCCGGCGGCACGGCTGT10.6369426751592357No Hit
GCGCACGGGAGCTCCGTCCTTGCCCTCGCAGCGGGCGCCGCGACGGCCGG10.6369426751592357No Hit
TCACCACACCGTCCGGCATCACCCGCACGACCCGGCCACCGGGCCTCCGC10.6369426751592357No Hit
GATCTCAGCCAGCTGCAAGCGATTCTCGTGCTTCAGCCTCCCTAGTAGCT10.6369426751592357No Hit
ATTCCAACCTGGCGATCCTCGATCTGCTGGCGCGCGAGGGCGCCGGTTTC10.6369426751592357No Hit
CACGTCAAGACCTGGATCGACCTCGCCATCGCCGGCGCCACCCAGGGAAG10.6369426751592357No Hit
CAGCAAGTACCTGTTCCGCATCGCCCGCCTGCTGCAGGAGCGCGCCCGCG10.6369426751592357No Hit
CGTATCCGCCGCGTGACGGACCGCTCGCCCCGGTCGTCGACGCAGCGGCA10.6369426751592357No Hit
GGTAATCATCGGCCAGCGGCATCTTGGACAGCAGCGTCTCGGCGCTCATC10.6369426751592357No Hit
AGACCATCCTGCTCAAGTACGGCACCGAGGCGCAGAAGGAGCAGTGGCTC10.6369426751592357No Hit
CTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGGA10.6369426751592357No Hit
ATCCTGAGCTGGCACCACTTCTACGACCGGTCGACTCCCGACATCAGCCT10.6369426751592357No Hit
GTGTCCGGGTCGCTGACCGGGGCGCCGGCGACCAGCTGCGTCGTCGCCGG10.6369426751592357No Hit
CACTGATAATTCATTTTTAATCAGCGACATCTGACTGAAGAATTGTTGGG10.6369426751592357No Hit
TACTTATTATTATCATCCAGTCGAGCGACAATTGATCTTACTTTCATCTG10.6369426751592357No Hit
TAACTACACGTGGCGCGTGCGTCCGGCCACCTCAAGCGACTGGTCGGCCC10.6369426751592357No Hit
TTGCTGCATTCCGCTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATT10.6369426751592357No Hit
GATATATGGAGGATGGGGATTATTGCTAGGATGAGGATGGATAGTAATAG10.6369426751592357No Hit
GTACACCGCGGCGTGCTCGGTGACGGCGGATGCGGCGCCGAAGAGCGCGA10.6369426751592357No Hit
AGAAGGTCGACCGGGAGAAGCAGTGGAAGGCCGGAGACATGGACGTCGTC10.6369426751592357No Hit
GGGCAGCCCCATCGCTGCGGGCGGCGGCGGCCTCGGCGCGCTCGAGCGCA10.6369426751592357No Hit
AGATCGAGAGGAAGGCGACCGTGACGCCCTGCGTCGAGGGGCTCAGGTCG10.6369426751592357No Hit
TCGCCGTGTTGGCGTTGCGCAGACGCGTCAGCATGTCGGCGACCGGATCG10.6369426751592357No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA10.6369426751592357No Hit
CTCGTGGTCCGTCGGCAGCCGCGCACCGACCGCGGCGGCGAAGCGGCGGG10.6369426751592357No Hit
TCTCGAAGCCGAACGGCGCCGGGTTGCCGATGTTGAGCTTCAGGATGCGG10.6369426751592357No Hit
CTGTGGCACCAACCTGAAACAGAAGGGCCATTTCTTTGTGGAGGATCAAA10.6369426751592357No Hit
GCGTCACCTACGGCTCGACGGCGCAAGCCGACCGGGAGACCGCGCGGGTC10.6369426751592357No Hit
GGGCTGGACACCGAGCGGCTCTCCGCGCTGGTCGACGTCCTGGGCGCCGT10.6369426751592357No Hit
CCTGGTTATCGAATCCGACGATCCCCATGGAGCGGACGGTCTTGTAGGTC10.6369426751592357No Hit
GGGCCAGAACGCCCGCCTGGCGGCGAAGCTGACCGGCGCGAAGATCGACA10.6369426751592357No Hit
GCGTCGAGATCAGGCGCAGCTGCATCGCGCGAAGGGCGTCGTCGTCGGGC10.6369426751592357No Hit
GGGAAATGTCTAGTGTCTAGTGGATCCAGGCCACAGGAGAGAGTGCCTTG10.6369426751592357No Hit
CCGATGTCGATCAGGTCGCGGATGATGGTGTCGACATCGCGCCAGACATA10.6369426751592357No Hit
ACGACGCACCGGTGCCGCCCGCCGTCTGGCGCGGCTCGCCGCGCACCGAC10.6369426751592357No Hit
GCCCTTGCGGAAGCGATGGAGGCGTTTCGTTGAGCTTCTGTCTCTTATAC10.6369426751592357No Hit
TCGTCGAGGGTTGCGACCTTCGCCAGCGGGAAGCCCGGGTCCTCCGCGCC10.6369426751592357No Hit
GTGTTGATTTCATGAATGCGATTTCTGATATGGCGGCGGTCGGTTTCCAG10.6369426751592357No Hit
GATCAGCAGCGCCCCGCACGCGGCGGCCAGCAGCGTCGTGCCGCTCACCG10.6369426751592357No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6369426751592357Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGTGAGCATGCGCGCCAGCACCCTCGGGTGCGCCGGCACCATGATCGAA10.6369426751592357No Hit
CTTCGGCATAAATGGGTGCCGGGGCCCACCAGGTCTGGGCGGTCTCTTAT10.6369426751592357No Hit
CTCCGGTGTGGGGAGGACTCGGCGCGTGGGCTAGACGTTGGCTACGCGGT10.6369426751592357No Hit
GCCTCGCGCAGCCGCTGCTCGAGGTAGGACGTCGTCTCCACCTCGGCGTA10.6369426751592357No Hit
GTCCGGGCCGGGGAGTGGGAGACGCCGCTGCGGATCGACGCCGAGCAGCT10.6369426751592357No Hit
CGTGCACCCCCGAGAGGCCGAGCGCGTCGAGCACCGACGCCACGTCGTCG10.6369426751592357No Hit
ACCGGGAACAGCGCCAGCGCCGGAATGCCCAGCTTGACGCATTCATCGGC10.6369426751592357No Hit
CTTGTCATCAATGGAAATCCCATCACCATCTTCCAGGAGCGAGATCCCTC10.6369426751592357No Hit
GCCGTCCAGCGATCGATCGTCGCGGCCCTCGCCGGCGAGGCCGAGGCGCG10.6369426751592357No Hit
GTTCATCACCATGCCCATCTGGGCCATGACGCGCATCAGTACTCGACCTC10.6369426751592357No Hit
GGACGTGGACAGGTCATGACCGGCACGGCGCCACGTCGGGACGCCGCCCG10.6369426751592357No Hit
CCCGAGAGGTGGCAGACGAGGTTGAGGGCTGTCCGCTCGGCGGTGAGCAG10.6369426751592357No Hit
GCGAGCAGCCACCCGAGGTCGAGCAGGGGATCGCCGATGGTGGTCATCTC10.6369426751592357No Hit

[OK]Adapter Content

Adapter graph