FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003641444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT27.4074074074074066No Hit
TCACTGGACAGATCAGAAGCACCTCTTCTTTTATAGAAGTTGATGGATGG27.4074074074074066No Hit
CTTATTTTACTTCTTTTAGCTGTTTAACTTTGTAACTGTCTCTTATACAC27.4074074074074066No Hit
GCTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATTCTGCATTTAATT27.4074074074074066No Hit
GTCTTCCTGTCCTCCAGGGGCGCTCAGGAGCAAAGGCTTTCCACGGGCCT27.4074074074074066No Hit
GGTGCCCACAGCAGAGATGACGGTGGTCTTGGAGCCGCTGGCGCTGGTGG13.7037037037037033No Hit
CCCCAAGAGCTGAATGGGAAGTTGTTAGTGATGCTGTAGACCATGGTCCC13.7037037037037033No Hit
AAGATATACTTTTTAATGGATATGCATCAGCTCTGCAAGACAAAATATTT13.7037037037037033No Hit
CTCCCCACCTCTAAGTTGCCAGCCCTCCTAGAGCTACCTGTGGAGCAACC13.7037037037037033No Hit
GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCG13.7037037037037033No Hit
GGCTGAGTAGCTACCATCATCGCTGGTGGGGAAACTGGTGGTAGGGGTGT13.7037037037037033No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGACATACTCATC13.7037037037037033No Hit
CAGTTGGACGAGTTGGTGGTAGGATGCAGTCCAGAGCCTCAAGCAGCGTG13.7037037037037033No Hit
ATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGC13.7037037037037033No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGG13.7037037037037033No Hit
ACGCAGAGTACATGGGAGTGTGCGCTTTTGAGAGTCGCGGCGGAAGGAGC13.7037037037037033No Hit
GTGACAAATGTGGGAGTGGCATAGTTGGTGCTGTGGTGAAGGCGCGGGAT13.7037037037037033No Hit
GTCCTGGGCTGACAGTCCATTAAGTGCCCCTACCAGTGGGAGAAAGCAGC13.7037037037037033No Hit
GAACACCCAAAGACACACGTGACCCACCATCCCGTCTCTGACCATGAGGC13.7037037037037033No Hit
ATTGAAGACCATGAATCTGGAGAAGATTTCTGCTTTGATGGACAAATTCG13.7037037037037033No Hit
CATTGGAGGCCAGCAGCGTGGCCTGCTGCGAAATGAGAGTCACCAGGCGT13.7037037037037033No Hit
ACTTCGCAGAGTGTTTCAGAAATACACCAAGTACAGTAAGCATGACATGA13.7037037037037033No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)