FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143
Sequences flagged as poor quality0
Sequence length146
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAAGAGAAGGCTAACAGCCCAAGAGTGAATAAAAATATTGATCAATA42.797202797202797No Hit
CTTCGCATCCAATTATACTTCATATACAAAGTATAAGCTCTCCAGTTTGC32.097902097902098No Hit
CTATTCATGTTCACACCTTGAGCAGAAAGACCAATTCCCATGTAACCATC32.097902097902098No Hit
AAATAAATGGAGGCATAGACAGGGCTCATGAATTGGAAGACCATATTTTA32.097902097902098No Hit
GCACCAAGCCATGAGGCATCCACCTCCATGAGTGAAACACCCCCACCAGG32.097902097902098No Hit
GATAGAAGCTATTCACAACCTTCATTGGCAAGCGTGATTTAATAAACGTG32.097902097902098No Hit
TTATAATTAGAGTGCATTTCATCAGCAAGGACTCTCTGCCATTATAATAC21.3986013986013985No Hit
CTCCTGGTGAGTAACTAATTTGTTTTTGCTTCAGTCCCTCCAATTCATTT21.3986013986013985No Hit
GGGTAGAATCAACATTGTGAAAAAGAATACTGCCAAAAGAAATCTACAAA21.3986013986013985No Hit
ACCGGGCAACATCGCCTACAACCCGCTGCTGATCTACGGCGGCGTCGGCC21.3986013986013985No Hit
AATTAGATGTTTTGTATGTGTCATCTCATAAGAAAAAACTTAGCCCAAAA21.3986013986013985No Hit
ATGACCGTGTCGCCGTGCGGCGGCGGGTCAGAACAGGGTGTCGCGCACGC21.3986013986013985No Hit
GCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACA21.3986013986013985No Hit
GTACTGAGAATTCAGTGAGGATACTGGAATCGCTAACTGGCACTGAATCT21.3986013986013985No Hit
CCATTCGATTCCATTCGATGATGATTGCATTCGAGTCCATGGATTATTCC21.3986013986013985No Hit
GCTCCTGGTTTAGGTATAAACTTTTGACTCACAGGACAAATTCTATCATT21.3986013986013985No Hit
AGGCAGGGAAGGGAATGGTGATGTTCTTTCATATTTAGTGGGGAACTTGG21.3986013986013985No Hit
CGTAGGGGCTGATCGGCAGACCGGGCCCCAGGGAGAGCAGAATGCCTCCC21.3986013986013985No Hit
GTATTTCTTCAAGCACTGAGTGAAATCCTAGAGCTAGCCCTCTGAGCCAA21.3986013986013985No Hit
GTACTCTGAAGACATTTTTGGACCATTCCAGGGTCTCTACATCACATCGT21.3986013986013985No Hit
GGTCACCCTGATCCTGATCCACACTGAGTGAGGCTAGTGACAATGTAAGA21.3986013986013985No Hit
CATTGCCCCTCTGCCAGAAACAGCAACTTCACTTCTCATCAGACACTAGC21.3986013986013985No Hit
GTGAGGTGGTGCTTGAGTATGGTATCAGGGAGCCAGGTAAATGAGATGGA21.3986013986013985No Hit
AGACAGCATTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG21.3986013986013985No Hit
GACCTCCACCCAGGAAGAAAAATCAGCCCTCTCAGCCCTGGAGCCCTGCT21.3986013986013985No Hit
GAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCC21.3986013986013985No Hit
GTCCGACTCGCTGCACTCGGCCGTCGTGGAGATCGTGGTGAAGAAGAACG21.3986013986013985No Hit
CAATTTGAGTCCATTCCTTTCCAGTCCATTTCACTCCAGTCCATTACTAC10.6993006993006993No Hit
TCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATAC10.6993006993006993No Hit
CTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAG10.6993006993006993No Hit
ATATGATACAGGACGAGGGAGAAAGTGAGTTGTCAAGGATGACAGGTAAA10.6993006993006993No Hit
TGTTTACACTGAAATAATTTTATAAACTCTTTTCTTTTTTACTTTTTCAT10.6993006993006993No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT10.6993006993006993No Hit
AAGTTTAAGCATTTCATCCTTTACTCTTCTAATGTTGTGAAGTAGTTCCA10.6993006993006993No Hit
GGCGGTGGCCGGTGCCCTGTGCGAGTTGTTCGCCCAGGCCAGCGAAGTGC10.6993006993006993No Hit
GTGTGAGCCAGGATGGTCTGGATCTCCTGACCTCGTGATCTGCCCACCTC10.6993006993006993No Hit
CGTCATCCGTGCTGGCCTGCATCCTGACCGGCGAAGAACTCGGCCTCGGC10.6993006993006993No Hit
GGCAGAGCCTGGATCTTGGATTTTATGTAAAATATATCCATGGCGCTATG10.6993006993006993No Hit
TTCTATAAAACTGGAATGATAGTACCTGTAGTACTTACCCTTATGTTTTT10.6993006993006993No Hit
CTTTGGTTTCACTGGAATAGGTGATGACATAACTCAATCTTTAGTCAGAG10.6993006993006993No Hit
GTCAGCAGAAGTGCCATCATATAAACACTACACCTTCAAAAAAGTTTCCT10.6993006993006993No Hit
GCCTTATGATGGACCAAGGGATTATTCCTTTGGCACACCTCACAGGCTTT10.6993006993006993No Hit
GCCATGATGGCAACAGAAACCAAGAGACACAATTACGCAGGTATTTAGAA10.6993006993006993No Hit
CTTTTGAAATGTATTTCTTTTCTAAAGTCTTTTTGTTCTTCACAATAACA10.6993006993006993No Hit
GGATAGGGGACTGACCTTGTACAGGCAGCATGGAGAAACTAAGACAGAGT10.6993006993006993No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
CCACCACGTCCAGCTAATTTTGTATTTTTAGTAGAGAAAGGGTTTCACCA10.6993006993006993No Hit
GAATAATCACACAAATAAATATAAATCTGTTACTGTGTCAAGCTCTGTGA10.6993006993006993No Hit
AATTTTTGTTTATTTATTGAGACGGAGGCTCACTCCGTCATGCAGGCTGG10.6993006993006993No Hit
GTACAGAACGGAAAGAAATGGAACGGAATGGAATGCACTCGAATGGAAAG10.6993006993006993No Hit
GAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC10.6993006993006993No Hit
GCATCGTAAGTCTGCGTCACCCTAAAAAACAAACAAAATCCCCACAGGGG10.6993006993006993No Hit
CTACCACAGGGTTATGACTTCAGAATCATACTTTCTCTTGATATTTACTT10.6993006993006993No Hit
AGCCTGGGCAGATAAGCAACTCGGAAAACGCAACACTTTGTGGTTTTGGG10.6993006993006993No Hit
ACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCCGA10.6993006993006993No Hit
AAGCGGCTGAACTCACCGAACGACGTCGTGGTGAAATCCGACGGCGCGAT10.6993006993006993No Hit
CTGTACTCCAGCCTGGACAACACAGCAAGATGGAGTCTTGCTGTGTTGTC10.6993006993006993No Hit
GCTCAGTTTTTTGTAGGCTTTTGGTTGTTGGTGTGTGTTCCAGTATGGTA10.6993006993006993No Hit
CCCCTGCCCATAAGTTGCTCTTGGCCTTGGGGAACTGCCTTATGCCAGGT10.6993006993006993No Hit
GGCTCTACCAGTTTATTCTAAACAATATTACCAGCCAGGCACGGTAGAGC10.6993006993006993No Hit
ACATAGTATTCCATGGTATATATGTACCACAATTTCTTTATTCAGTCTGT10.6993006993006993No Hit
TCAGAAGACAAACAAAAACGTAATGAAAAAGCTAAAACTAAAGTAACATT10.6993006993006993No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC10.6993006993006993Clontech Universal Primer Mix Long (96% over 25bp)
GAATCCCAAAGTGGCTTCTTTTGTAGAGCCAGTAATCCCCTGCCCTGTCC10.6993006993006993No Hit
AATCTGAACTGAGGAGAGTTGCGAATACACTGTCGCAATTCATCATAAAC10.6993006993006993No Hit
GCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCAC10.6993006993006993No Hit
CCTTCTGTCTAGTTTTTACATGAAGACATTTCCTTTATCAACATAGGCCT10.6993006993006993No Hit
TTTTTTATTGCGTCTATTTGATTCTTCTCTCTTTTCTTCTTTATTAGTCT10.6993006993006993No Hit
GAGCGCGCTTCAGCTTCGGCCTGAGGCGCTACGCTCACGGGTGCGGGCCC10.6993006993006993No Hit
GACCTCATGATCCGCCTACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC10.6993006993006993No Hit
CTTTTTTTTTTTTTTTTTTTTTTCTTGAGATGGAGTTTTGCTCTTGTTGC10.6993006993006993No Hit
TCCTGCTTGTCCAGCTGTTCCTCCAAAATCTACTTTGGCTTCAGCTCCGG10.6993006993006993No Hit
ATTTACATATTTTTCTATCTTTGGCTGACTTACTAATACTTTGCTTGAGG10.6993006993006993No Hit
GGAAATTCTACTTTAGCTCCTTTTTTAAAATCTCCTCACAGTTTTCCCTC10.6993006993006993No Hit
ACCTGGCACTGTCCCCGGAGCGGGTCGCGGGGCGCCGGCGCCCGGCGCGG10.6993006993006993No Hit
GCATATCTACAACTATCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTA10.6993006993006993No Hit
GGGCAAACATGGCAAAACCCTCTCTCTACAAAAAAATTACAAAACTTAGC10.6993006993006993No Hit
CTTTATAAAGAGATCATGTCTTTTTGGCAATGCCTTTATTTGATGTTTTA10.6993006993006993No Hit
AAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACC10.6993006993006993No Hit
CTAATGATGAGGATGTGAACCAGTTGTGTAATATGCAAAGGGAAAACAAC10.6993006993006993No Hit
TTATTAAACTCTTGACAGAAACCAAAGAGCTGATTCCAAACATAAAGCAT10.6993006993006993No Hit
TTTCCTTTCCTACTGTAGGCCTCAAAACGCTCTAAAGAGACACTTGCAAA10.6993006993006993No Hit
GTGAGTAGGAGAATTTGCAGCTCCTTGTTATTTATTTGTAATTTTATTAT10.6993006993006993No Hit
CTTAAAAATGTGGCCAACAATTTTTTTAAAAGATGGTTACCCTGCAGTGC10.6993006993006993No Hit
TCATTGAATTGACTCATATGGAATCATCGCCGAATGGATTCCAATGGAAT10.6993006993006993No Hit
TCTGGAATTAGATTGTAGTTGTGGTTACACCACAAATATACTAAAAACCA10.6993006993006993No Hit
ACTTATAGCTTACTGAACAAAAAATTGCAGTTTTGGTATGGAAGTTGATT10.6993006993006993No Hit
ATTGAATGCAATCATCGAATGGTCTCGAATGGAATCATCTTCTAATGGAA10.6993006993006993No Hit
GTATTTCTTCAAGCACTGAGTGAAATCCTAGAGCTATCCCTCTGAGCCAA10.6993006993006993No Hit
GGCATGAAATATTTTTTTCCATCCTTTTGTTTTCTGTTGACATGTGTCTT10.6993006993006993No Hit
GTGTAGGGAAGTGTGGGTGCTTCCCATGTACTCTGCGTTGATACCACTGC10.6993006993006993Clontech SMART CDS Primer II A (95% over 24bp)
GACTATATGGGTCTTGGGATATGCGTAAAAATGACCTGAGACAAAATAGC10.6993006993006993No Hit
ATCCTAGTGAGTTGAGTATGTAAAAAATATTTTGATTAGTAATAAAATTG10.6993006993006993No Hit
GGTCTGGAATGGAATGAACACGAATGTAATGCAATCCAATAGAATGGAAT10.6993006993006993No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
AGAGGAGAGGTGGGGAGAGGAGAGGAGAGGAGAGAGAATAGAAAAATAAA10.6993006993006993No Hit
CTTCCCTGATTGCCACTTTATGTAAACTATGTGAAGTTTGAACCACAGTA10.6993006993006993No Hit
CTGCAGAACTGTGAGCCAATTAAACCTCTTTTCTTTGTAAATTAACCAGG10.6993006993006993No Hit
GCCTTCAGGTTACGGAGCGGAGCCACGTGGCAAGCTAGTGTCAGTGCTTG10.6993006993006993No Hit
CCAAAGGAGTTCCAAATATCCACTTGCAGATCCTTCAGAAAGAGGGTTTC10.6993006993006993No Hit
GTTGTCCCAACAGTACATGATGCTGTCATAATTTTAAATGAAAACCAGGC10.6993006993006993No Hit
TTCCTGCACACTGCAGGACTTCTCCAATGGGCACTCTTTACTCTGGGTCT10.6993006993006993No Hit
CTTTAAGGGAAGAATCAGGGGAGAGGGCAAGGAAAGAAGGGGAGGATGAG10.6993006993006993No Hit
GGTTCTTTGAAAAGATAAACAAAATTGATAGACCATTAGCAACATTAACC10.6993006993006993No Hit
CATCCATTTATTGCCCATTCTGGGTGTGTTGAGCGTTTTAAGTTTGCTAT10.6993006993006993No Hit
GTTTACAGAAGAGACAACCACAGATTGGGAGAAAATATTTGCAAACCATA10.6993006993006993No Hit
ATCATATACTGGAGCTACAAGCCAAAGAACACCAAGGATTGTGGGCAGCT10.6993006993006993No Hit
ACCCTGGAGTATTCGTGCCGAGCCCGGCAACCGGTGCACCATCTTTCCGG10.6993006993006993No Hit
GGTCTTGTTATCCTTTCTGGACAAAGATTACAATCCCACACGCTCTTGCT10.6993006993006993No Hit

[FAIL]Adapter Content

Adapter graph