FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143
Sequences flagged as poor quality0
Sequence length146
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAACCTCTGTCTCCTGGGTTCAAGCAATTCTCTGCCTCAGCCTCCTGAG42.797202797202797No Hit
TATAATACCACATGTCTCTTTCAGCTGGCTACATAGCTTAGATGACAAAA32.097902097902098No Hit
GAATGACAACGTTCCAGGTAAGAATATTATTTATTTGAAAACCACTGCTA32.097902097902098No Hit
GCCTTGATGATTGAATTGTCTTTGAGGTCCTTTTCTTGTCTTTAAGAACA32.097902097902098No Hit
GTATAATAATTATAGGATATAGAACTGATATAGGTTGGATATTTTCCCCT32.097902097902098No Hit
GTCCTGGAGCCCGAAGGACAAGTTCAGCTACATCGGCCTCTCTCAGAACA32.097902097902098No Hit
GTATCAACATCAAACGGAAAAAAACGGAATTATCGAATGGAATCGAAGAG21.3986013986013985No Hit
GATCTAGTTTCATTCTCCTACATGTGGCTTGCCAATTATGCCAGCACCAT21.3986013986013985No Hit
TGGTTAGAAGATACTGCCCTGGAAGAATAGGTGGGATGACAAAAGAGATT21.3986013986013985No Hit
AAACTACGCAATCCCACGGGATCCTGCCTCTCAGGGAAGTAGGCCCACAC21.3986013986013985No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG21.3986013986013985Clontech Universal Primer Mix Long (96% over 26bp)
GAGGATCATGTAATCTAACCACCATCTATACAAATAAATAACCAGGTTCA21.3986013986013985No Hit
GTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCAT21.3986013986013985No Hit
AATCAAAACGTTACAACAAGAAAGAGAAGATCTAAATAAGGAACTAGTCC21.3986013986013985No Hit
GCCCATTAGTGAGCATTTACCTTAATGTTCTAGAGTCCTCGTTAGTAGAA21.3986013986013985No Hit
GTTCTATTGCTATTTCTCTCAGGTTAAGTTTCTGGGCCAAGACTCTTGAT21.3986013986013985No Hit
GGGCCTGTCTGGTGTTTCAGCAAATGAAAACAAAAATATAAAGCCCATCT21.3986013986013985No Hit
GTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGCATT21.3986013986013985No Hit
TCATGGTGCTGCTCGGCCTGACGACGGCCATGGCCGTCCAGCTCGTCGGT21.3986013986013985No Hit
CCACCGGGTACCGGCCGCTGCGCGTGCGCGACACCCTGTTCTGACCCGCC21.3986013986013985No Hit
CTCTTAAGAGTTTTCCTTGCCACCCTACCCCATTTGTACATCGATTCCTT21.3986013986013985No Hit
GGACGACATAAGGCATTTTGATAAGAGAAACTTCCAATGGACACTAGGCA21.3986013986013985No Hit
GACTAGCAGGGGCCATGCCAGGGTAGGAGAAAAAAAAACAATTCTTGGGA21.3986013986013985No Hit
GAGTTGAACGTGTGGAAGAACTCTTCCTGCGAACGTTCCTTGTTGGCGAA21.3986013986013985No Hit
GAGAAGCAAATCATGATTGACATATTTCACCCTTCAGTTTTTGTAAATGG21.3986013986013985No Hit
GCATAAAAGGCTCTTTATCGTGTCCTAATGATATAGCCTTAGATTGGAAA21.3986013986013985No Hit
CTCCATGGTGCCGCCGGCCTCGACCACGGCGCGCTTGGTCACGAGGTTGT21.3986013986013985No Hit
GGACTACTCTAAAACTTGTTGGAAAATAAATTACGGACACCATATAATGT10.6993006993006993No Hit
GCTGTGGAACAGGATGAACTACTCAGGATTTTGTCTTATCTGAACTAGTT10.6993006993006993No Hit
GTCCTGTTAGCCTAGCAAGTTAGCACACCAAAGTTCACATCTAAACTTTA10.6993006993006993No Hit
ACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCC10.6993006993006993No Hit
CGTCAATAACACACTGAGCCTAAAATCAAATGGTGGAATATTAGAATAAA10.6993006993006993No Hit
TCTTTCATCTTTTTGTTCATATCCACTCTCACAGGTGTAAGGTGATATTT10.6993006993006993No Hit
GCTCCTCTCTCGGGCACTGGGGTCGCGGGAGACGTCGTCGGGAGCTCGGT10.6993006993006993No Hit
GTAGACGAGGTGAGTACTTGGGGCCAGCAGGGAACCCAGGGAGGAGCTGA10.6993006993006993No Hit
GATCTGCCCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTAAGCCA10.6993006993006993No Hit
CTCCAGCCTGGGCGACAGAGCGAGACGCCGTCTCAAGAGAAATAAATTAA10.6993006993006993No Hit
TTACAACTGAATTAAGTTGGGCTCCCTGGGAAAGAGACTGGGAAACAGAT10.6993006993006993No Hit
CCCGTGTCACGCCGCTTCCCGTACAGGGTGACCTCGTCCTGCTTGGCGGT10.6993006993006993No Hit
GCCCAAGGTAATTTACAGATTCAATGCCATCCCCATAAAGCTACCAATGA10.6993006993006993No Hit
CACCAAGACACATTTATGCGGCGCATCATTGAAGGGAAAATTTTCATTAG10.6993006993006993No Hit
CTTAGGAGGAGACAGTGAGTCAACCATGAGTCAGCCTCCTTATTATAAAT10.6993006993006993No Hit
AGGTCCAGTGAGTCAGCCAAGGGCCAGGCAGACGAGGCTACAACCCTAGG10.6993006993006993No Hit
AAGTGTTACTAAATTTCCAAACTGAAACAGAAGAAAAGTAGAGTAATTAT10.6993006993006993No Hit
AATTGGAGCATTTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTG10.6993006993006993No Hit
AAATCAGGAGTATCGTGGTAATGTTCTCTCTTTTTATTTATCAAATTAAT10.6993006993006993No Hit
GGGGTTGATGGAAGAAGCCTCCCCATGCCTGGAGAGACCTACTCTGTTAA10.6993006993006993No Hit
GAAAAGATGATATTACTACCTCTGTGGGCTGGAAGAACTTCACCTGTTGG10.6993006993006993No Hit
GTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCG10.6993006993006993No Hit
TAGTAATGGACTGGAGTGAAATGGACTGGAAAGGAATGGACTCAAATTGC10.6993006993006993No Hit
GCTTGGAAACAGTCTTTGGTAGAATCTGCAAAGGGATATTTCTGAGACCT10.6993006993006993No Hit
CCCCCGGTGTCCCCGCGAGGGGCCCGGGGCGGGGTCCGCCGGCCCTGCGG10.6993006993006993No Hit
AGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAA10.6993006993006993No Hit
GAATTTCAGTTTAAAGAAAATGGAAGCCAAAAATACTTGTTTTCATTATG10.6993006993006993No Hit
CCCCACCCCCGCGCAGACGCAGTGCTGAGCACACAGCTACCGGACAAAGA10.6993006993006993No Hit
CAAGGCGGGTGGATCAGCTGAGGTCAGGAGTTTGAGACCAGCCTGGTCAA10.6993006993006993No Hit
CAAAGTCAAGCTCTGTCACCTAAACTGGAGTGCAGTGGCATGATTATAGC10.6993006993006993No Hit
CCTGTGATGTGAGGAGTGACTGCTGACATCAGTGGAGATGGATGAATACG10.6993006993006993No Hit
ACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAAC10.6993006993006993No Hit
CTGCTAGGATAATCCTCATTTGCTGGTGGTGCTGAAAGTGGAATGGAAAG10.6993006993006993No Hit
ATGATGATTGCATTCGAGTCCATGGATTATTCCATTCCATTCCATTAGAT10.6993006993006993No Hit
CGTCTGATTTCTGCGATGATTAATTGATCGGATCTTTCACCCGAGTGAGG10.6993006993006993No Hit
GACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAA10.6993006993006993No Hit
AGATTAGCATTTCTGCACATGACTCTGGATGGCCTCCTTCAGCACAGGGG10.6993006993006993No Hit
GTCTAGCTGTGTCACCCAGGCTGGAGTGCAGTGACACCATCTCGGCTCAC10.6993006993006993No Hit
GGCATAGTTTTCTCCCCTCGGGGTGGTTAATGACAGAAGGAGGAAAGGTA10.6993006993006993No Hit
GTTCACTACAGTCTTGATCTCCAGGGCTCAAGTGATCCTCTCGCCTCAGC10.6993006993006993No Hit
GCCCAGACATGGCTGAAGGCTAAATGTATTAGAAATTATAAAGGCAAAGT10.6993006993006993No Hit
TGGTTAGAAGATACTGCCATGGAAGAATAGGTGGGATGACAAAAGAGATT10.6993006993006993No Hit
GTGCATAAATGAAGTTATAGAAGGAGTAGCTGACTCTGGGAATATTGATA10.6993006993006993No Hit
GTCTAAATAGGTCCAGTTAAAGCACTGCAGGGTAACCATCTTTTAAAAAA10.6993006993006993No Hit
CTCTAGTAGCTATAAATATCTCAGTAGCCTGTAATCTTGCCAACTACCTC10.6993006993006993No Hit
GCAACACAGGAACACTCAGTAAATTCTTTTAGTTGTGTTTCTTATAGTTA10.6993006993006993No Hit
GGCCATTGCCCAGGCAGAAACTGAGAAGCTGGAAATGAGAGGAATCAGCC10.6993006993006993No Hit
CGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATG10.6993006993006993No Hit
GTTTCTATTAGAATGAAAGCAATAGTCTGCTGCCCATCAAAGATATCTGG10.6993006993006993No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTTCTTGTCAGTCTCTCTGTGATTTTATTTTTCTATTCTCTCTCCTCTCC10.6993006993006993No Hit
GGCGAGAAGCACAGCCCGTTGGGGCCGAGCACGCCTTCGGCGACGATGGT10.6993006993006993No Hit
GTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGC10.6993006993006993No Hit
ATCTTGCTATTGTTATTGGTCTGTTCAAAGTTTCTATTTCTTCCTCAATT10.6993006993006993No Hit
CCATCTCAAAAAAGAAAAAAAAAATCTCCTGGGCAGGATGCCTGTGAAGG10.6993006993006993No Hit
CCACCCCTCGGCCATGGTGTAAATAAATCAAGTGGTAATTACACTCTGCA10.6993006993006993No Hit
GTTCTAAATTATACTCTCAGCATCCAGAGGGTGATAAATGTTTAGAAACA10.6993006993006993No Hit
GGCACACTGCAGGCCACTGACTGGAAGAACAACGCAGAGTTTGGCTGGGA10.6993006993006993No Hit
GCGCCGAGGATGCCCTGCGCCGCGCGTGCTGCGGTCGGCGCGTCGCCCGT10.6993006993006993No Hit
CAAGAAATACACTTCACCCATAAAGACACATGTCAACAGAAAACAAAAGG10.6993006993006993No Hit
ATGTAACTGCTTCAGGAATTTAGTGTTAAGGTTAGTAATAACGGGCAAAG10.6993006993006993No Hit
GTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGC10.6993006993006993No Hit
GTACATGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGC10.6993006993006993No Hit
ATTCCATTCGATTCCATTCGATGATTCCATTTGATTCCATGCGACGGTGA10.6993006993006993No Hit
ATTTTGCTTTGCTCTTTACTGTGCTATTTTAAATGCCAAGATAACTAGTT10.6993006993006993No Hit
GCCTTTTATGTGAAGACATTCCCTTTTCCAAAGAATGCCTCCAAGGGCTC10.6993006993006993No Hit
TTACACTACATTCCCTTCCATTCCAATGAATTCCATTCCATTCCAATCCA10.6993006993006993No Hit
CTATAATATTGACTAATTTGGTACTTCAGTGAAGGTAAAATTCTTGTTTT10.6993006993006993No Hit
GGCATGGTGGATCACGTTTGTAATCCCAGCACTTTGGGAGGCCAAGGCGG10.6993006993006993No Hit
GGTACAGCAAGAACAACTTGAGGTAAAGAAAGACCTGGACAGTTTGTAAG10.6993006993006993No Hit
ATTTTGTAGCATGCGTGCAGTGTTCTACTTTTTAGAATGCTACTGGGCTC10.6993006993006993No Hit
GGCCAGGTACAATGGCTCACCCCTGTAATCCTAGTGCTTTGGGAGGCTGA10.6993006993006993No Hit
GGATATTGGTATCTATCTTGATGGAATTTTAGGTTGCCTCATTTCTTTTT10.6993006993006993No Hit
GTGTGAGTTTCCCTGGGCTGCTGCAACAAAGTACCGCAAACTGAATGGTT10.6993006993006993No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC10.6993006993006993Clontech Universal Primer Mix Long (96% over 25bp)
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG10.6993006993006993No Hit
TCATTGTGGCCTTCGTTTGAGACGTGACTTCTTCCTACAAAACTAGACAG10.6993006993006993No Hit
AGGCAGGTGAGTAAAGGCCAAAATGATAAAATAAAAAAGGGACTAAGGCA10.6993006993006993No Hit
CCATTAGAATGGACTACAGTGCTTCTATAGATTTTCAAAGCAAAATCATG10.6993006993006993No Hit
AGTCCATTCCTCTCCAGTCCATTCCGTTCAATCCATTCCATTCCAGTCCA10.6993006993006993No Hit
GAATTTCAGTTTAAAGAAAAAGGAAGCCAAAAATACTTGTTTTCATTATG10.6993006993006993No Hit
GCTAGAGGATGGGAGGGAGTTTGAAATGGTCACACAGGCAGTGCCTATTC10.6993006993006993No Hit

[FAIL]Adapter Content

Adapter graph