FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGGGCGATGCCACCATAATTGAGAGTCCAGCCAAACTCGGTGGCTG310.714285714285714No Hit
GACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCG27.142857142857142No Hit
TCAGGATCCTGCCCCAGCCCAGGTGCAAGCACAGTGAAGAGTTGCCCCAC27.142857142857142No Hit
GTCAGGAACAGATGCACTGGTGAACGTGAGCATTCAAGTCTTTTAAAAAT27.142857142857142No Hit
GTCTGCAGGTGCGAGAGTTGTACCAGTAAGGCTGGATCTTACAGAGAAAG27.142857142857142No Hit
GGCGCAGCACCGTCGCGCTCTCGCCGCCCTGGCCCCAGTTGTCGGGGTCG27.142857142857142No Hit
CCTCTCTTCTAGATATGTTTCCTCTGCTGAGAAATTGAACAAAAAAATCT13.571428571428571No Hit
TTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCG13.571428571428571No Hit
GTGCAATCATGGCTCACTGCAGCCTCGACCTACTAGACTCAGGTCCCACC13.571428571428571No Hit
ACGCGCAGGCGTTCCACGGTCTTCGCGCGCGGCTTGTCTTGTTTGGTCTG13.571428571428571No Hit
TAGTGAAAGTAATATTTATCCAAACAAGTAAACACAAAACACGGTGCTGA13.571428571428571No Hit
GCAAGGAGAACTATTGTCTTATGATCACGTTTGCCATCTTTCTGTCTCTT13.571428571428571No Hit
GAGGATGGATAGTAATAGGGCAAGGACGCCTCCTAGTTTGTTAGGGACGG13.571428571428571No Hit
GACCGTAAATGCCCGTCCCGCCGGCGGTCCGGCCCTGTCTCTTATACACA13.571428571428571No Hit
GTATCAACGCAGAGTACATGGGGCGCGCGGCTCGGAGGCGCACCTGTGAG13.571428571428571No Hit
GGTGTGGACAGGAGTCTCCCACCGCCCTGGTGCTGGCTCAGACCTGCCCT13.571428571428571No Hit
TGATTGTAAGACTCTCTTATCCAAATCCTTAATGGCAGCCCATAACTCTT13.571428571428571No Hit
AGTAGAAGCTGGAGATGTGATTTACATTGAAGCCAACAGTGGGGCCGTGA13.571428571428571No Hit
TCCAGTCTCTGAGCTCTAAGGAGATCACCAGCCGGCTCCGCCAGTGGTCC13.571428571428571No Hit
GTGCCACAATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTT13.571428571428571No Hit
GGCCCTGGCCTGAGCCCACGTCTACAACCTGGGTGCAGCCTGTGAAATCA13.571428571428571No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)