FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4947
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGCGTCTTGTCCTCAGGTGTAGATGCTCCAGTCTCGGCTCAGCCAAA100.2021427127552052No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG90.18192844147968465No Hit
GCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCC80.16171417020416412No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.16171417020416412No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA70.14149989892864362No Hit
GCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCC70.14149989892864362No Hit
TTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCTG60.1212856276531231No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC60.1212856276531231No Hit
TGCCCAGGCTGCTCAGCAGGAGCTTCAGCGGGTTGAGGGTGCCGAGGGGG60.1212856276531231No Hit
CTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT60.1212856276531231No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT60.1212856276531231No Hit
GTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGTCCTCAGGTGTAGATGCT60.1212856276531231No Hit
GATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTG60.1212856276531231No Hit
CTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCT50.1010713563776026No Hit
GGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTTCCACA50.1010713563776026No Hit
TCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCTG50.1010713563776026No Hit
CTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTT50.1010713563776026No Hit
CTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCAGCAGGAGCTTCAGC50.1010713563776026No Hit
GTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGG50.1010713563776026No Hit
GCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCC50.1010713563776026No Hit
CCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAG50.1010713563776026No Hit
GTTCTAATGCTTCTTGTTGGCAGCTGCCACCTGTCCGGCGATTCTGTCCA50.1010713563776026No Hit
GGGTGGAGGAGATCTTGTTGATGTAGTACAGACCAACCATGGAGAAGATG50.1010713563776026No Hit
GGCCGGGGGAAGGGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCC50.1010713563776026No Hit
ATCTTGGACAGCGTGGGTATCGAGGCGGACGACGACCGGCTCAACAAGGT50.1010713563776026No Hit
CTTCAGGGCCTTCACGGCCCCCACGGCCTGGGGACCCAGCTCAGCCACAC50.1010713563776026No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)