FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003641600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4947
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG120.2425712553062462No Hit
GCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCC70.14149989892864362No Hit
GAAGTATACTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCC70.14149989892864362No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.14149989892864362No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG60.1212856276531231No Hit
CTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTT60.1212856276531231No Hit
GCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCC60.1212856276531231No Hit
TTCTTAGTGGGCTCGGCCAAGCCTGTGGCCCAGCCTGTCGCTGCGCTGGA60.1212856276531231No Hit
CTTCTGGGAGCCCTCTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCA60.1212856276531231No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG60.1212856276531231No Hit
GGCCAAGCCTGTGGCCCAGCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGG50.1010713563776026No Hit
CGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACC50.1010713563776026No Hit
GGGTTAAGCATCAAACATTGGCCATAAGTCACTGGGCACTTCCCAGGCTT50.1010713563776026No Hit
GCTGAGCAGCCTGGGCATCCCCGTGAACCACCTCATAGAGGGCTCCCAGA50.1010713563776026No Hit
CCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCAT50.1010713563776026No Hit
CACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCC50.1010713563776026No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA50.1010713563776026No Hit
CCTCGCGGGTGGGCAGCGTCTTGTCCTCAGGTGTAGATGCTCCAGTCTCG50.1010713563776026No Hit
CAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCG50.1010713563776026No Hit
TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCG50.1010713563776026No Hit
CTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAGCAGGGCCTTC50.1010713563776026No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG50.1010713563776026No Hit
GCCAAGAGGGCGACAAGTTCAAGCTGAGTAAGGGGGAAATGAAGGAACTT50.1010713563776026No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)