FastQCFastQC Report
Tue 10 May 2022
EGAF00003641832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003641832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412313
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC11600.2813396618588305No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC6690.1622553739513428No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATC6400.15522188240487203No Hit
GTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCC5470.13266620261791406No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC5080.12320736915886717No Hit
GTGTAAGTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTG4990.12102456143754867No Hit
GCTTACATGTCTCGATCCCACTTAACTATCTTGGGCTGTGACAAAGTCAC4770.11568880922988119No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC4680.11350600150856267No Hit
GGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCC4650.11277839893478983No Hit
GTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTCAT4310.10453223643203101No Hit
ATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAG4280.10380463385825817No Hit
ATCCAGCGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAA4180.10137929194568204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)