FastQCFastQC Report
Tue 10 May 2022
EGAF00003642139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19331
Sequences flagged as poor quality0
Sequence length140
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC370.19140241063576638No Hit
GTGCACCACCTGCGTGGCCCCGGGCCCGGCCAAGGCGCGTGTGGCCCTCA350.18105633438518443No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA310.1603641818840205No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG290.15001810563343854No Hit
GTGCAGACCCAGGCGCCGCAGCACAAGAGGCAGCCGCCTACCATGAGCAG270.13967202938285656No Hit
GTGCTGGCTCTGAGCACCGAGGTGCAGGCGGCGCGGGCGCTCACCGTGAG260.13449899125756556No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC240.1241529150069836No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT230.1189798768816926No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT230.1189798768816926No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT220.11380683875640163No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG220.11380683875640163No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG210.10863380063111064No Hit
CTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGAT210.10863380063111064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)