FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003642234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGCAGCATGTGCACCAGGTTGGTGTTCACCAGCTCATGTCTTCCCCA34.054054054054054No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT22.7027027027027026No Hit
TGCTGAAGCCTGGTTCACCAGCCGGACTGAAGAATTGAACCGGGAGGTCG22.7027027027027026No Hit
CCCCACGAAGATCTCGGTCCAGAAGCCATGACCGCCTGCCCTACCAGAGG22.7027027027027026No Hit
CTTATGAAGCTTAGTTGGGCCTGATATGAGATTCTGGGTTGGAATTTCTT22.7027027027027026No Hit
GTGTATACCTTTCTCTGATGCATCTAAAGAGAGTTGTTGGTTTTTCAGTT22.7027027027027026No Hit
ACCCTGGCCAACCCCCTCGGCACCCTCAACCCGCTGAAGCTCCTGCTGAG22.7027027027027026No Hit
GCTTGGAGCAAGGAGAACAGTAGAAGTTAGAACTCAAGGGCAGGTCCAGA11.3513513513513513No Hit
GGCTCGGGGCCGGGACCCTGGCCAACCCCCTCGGCACCCTCAACCCGCTG11.3513513513513513No Hit
CTTTTGGACCAAAGTCACTGTGAAAAAATTACTGACACACTAAAGACACT11.3513513513513513No Hit
GCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCT11.3513513513513513No Hit
GTCCAACACAAGGGCCTTCTTGCCATCATCATTCTTTATAACTTCAACCA11.3513513513513513No Hit
GGGCAGTGGTTTGTAGTTCTCCTCGAAGAGGTCCTTCACTTCCCTTGTTA11.3513513513513513No Hit
ACCCAAGAGATTTTGTAGGAAAAATTTCTCTTTTCAGATATTCAGCACGC11.3513513513513513No Hit
CTGTATTGCATAGGCCCAAAAAGCAGGGGCTAGTATTCTTATTTTCCTTT11.3513513513513513No Hit
CCCTGAACCGGCCCGACAAGCGCAATGCGGTCGACGGCCTGGTGGCGGCC11.3513513513513513No Hit
CTTTATAGCTTTCCATATACTGTCGCATTCATGATCTCATCTTGTGACTC11.3513513513513513No Hit
CAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCGACATC11.3513513513513513No Hit
TTCCTGAACGCCGATCATTGGCGTTCCGAGTTCCCCCGGAGCCGCGACTG11.3513513513513513No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.3513513513513513Clontech Universal Primer Mix Long (96% over 26bp)
GGCTTAGCAATCTGGCTGAAAATTGTTCTGTGAGATAAAACGTCTGCTCC11.3513513513513513No Hit
TCCTGCTGCAGGGCGGTGAGCGCGGCGCGGGCGTCGTCGGGCAGCCCGTC11.3513513513513513No Hit
GCTCCACGCTGGGCGGAGTCGTCGTCGAGTCCGGGCGCTTCGACTGGGGC11.3513513513513513No Hit
CCATGTTCACATCTTGACCTGGTGAAACGTTTACCTGCCTGGGATGCCTC11.3513513513513513No Hit
GCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTC11.3513513513513513No Hit
GAACGTCTTGATGGTGAATATGACACGCCAAAGGCCTTCTGATGGTGGCT11.3513513513513513No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGGCTCGGAA11.3513513513513513Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTGGCTTCTTCATTTCCTCCTTTGTAATGGGGCAGGTGAAAAATAAAGTG11.3513513513513513No Hit
GTCCAGAGGTAAAGGTGCCAACTTGTCAACAGGAAGGGGCACTTTGTTGA11.3513513513513513No Hit
GCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGG11.3513513513513513No Hit
CCCAATTTCTGTGAGATGGATGGCCAGTGCAAGCGTGACTTGAAGTGTTG11.3513513513513513No Hit
GTGTGTACTCTGTCCAGTTCCTTTAGAAAAAATGGATGCCCAGAGGACTC11.3513513513513513No Hit
ATTCTGTGAAGGAAGGCATTGGTAGCTTGATGGGAATGGCATTGAAACTA11.3513513513513513No Hit
GGCAATAACCCATTTCTAAACGTAAGGTATCTCTGGCGCCAAGGCCTATT11.3513513513513513No Hit
GGTTCCTCCTTAATAAAGGAAGGTTTTGCACAAATTCCTGTATCATTCAG11.3513513513513513No Hit
ATGTTGAGTGGCCCAGGTCAGTTTGCTGAGAACGAAACCAATGCTGTCTC11.3513513513513513No Hit
GTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGGCGGC11.3513513513513513No Hit
GGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCG11.3513513513513513No Hit
CCTCATGGACACACCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCC11.3513513513513513No Hit
GTTCATGATCGATGTTGGGCAAAGGGTTTCTCCAGAACATGAAGGAACTA11.3513513513513513No Hit
GGGTCGAGCTCCACGTGCTCGTTCAACCCGTACCGCCTGTCTCTTATACA11.3513513513513513No Hit
AAGCCGGCCACCGCTCGGCAAGGGTCTCGCCCGCTTGAGCGAGATCCATA11.3513513513513513No Hit
GTCGACGCCCGCCTGATCTACACCGGGACCAAGGGCATGCACATCGCCGT11.3513513513513513No Hit
AGTTTTCTCAACCTTCCTAAGAGTGGCCATCCTAGACTAAATTGCTCACA11.3513513513513513No Hit
GGCCACTTGGCCCAGGTAGAAGTAGATGAAGTGTTTGGTTTCATGTGTCA11.3513513513513513No Hit
GTGCAGATCGAACCGAACTCCTTGCCGCGATGGCTCATCTCCATCACGCT11.3513513513513513No Hit
GTATGCCACCATCTATGAGCTGAAAGAAGACAAGAGCTACAATGTCACCT11.3513513513513513No Hit
TCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTA11.3513513513513513No Hit
GGTAGAACAGGTTTCAGGCAGGGAGGATAGGAGCATCATCTTCCATCCCC11.3513513513513513No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG11.3513513513513513No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG11.3513513513513513No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC11.3513513513513513No Hit
GCGGAGATGGCAAAAGACGACGTCCTCGACGCCGGGCTTGCTGTCTCTTA11.3513513513513513No Hit
AACACTGTCAGGGCCCCCAGCAGGGCCTTCAGGGCCTTCACGGCCCCCAC11.3513513513513513No Hit
GAGCATCATCTTCCATCCCCATCCACCTCCGCTCTTTATCTTGATGTCAC11.3513513513513513No Hit
ATGCAACACTTCAAGTCACGCTTGCACTGGCCATCCATCTCACAGAAATT11.3513513513513513No Hit
GCCTTGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGTCACTGCGCCCG11.3513513513513513No Hit
GCACTAACTCCCTCAAGGTGCAGGTGGTGGACGTCAATGACAACGCACCT11.3513513513513513No Hit
CTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAGCAGGGCCTTC11.3513513513513513No Hit
GATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACG11.3513513513513513No Hit
ATGCCAGATGGTTTGCTCAAGGATAGGATAAATTAAGCCCCCCTAAAGTC11.3513513513513513No Hit
ACCTCAGCCCCCCATTCTTCAGCTTTCAGTGGAGAAGCTGAGCAGAGATG11.3513513513513513No Hit
GCACAGACTTCACCGGCACCATCAAGCTGCTGAATGAAAAAAAAAAAAAA11.3513513513513513No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC11.3513513513513513No Hit
GGGTGAGCCAGTGGAACAGCGGGAGACCTGTGCTAGTTTTACAGATTGCC11.3513513513513513No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGG11.3513513513513513No Hit

[FAIL]Adapter Content

Adapter graph