FastQCFastQC Report
Tue 10 May 2022
EGAF00003642367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322459
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT7980.24747332218979776No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC5530.17149467064029844No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT5120.15877987589119857No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG4570.14172344391069872No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA4390.1361413388988988No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG4280.13273005250279882No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC3390.10512964438889906No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT3380.10481952744379906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)