FastQCFastQC Report
Tue 10 May 2022
EGAF00003642368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322459
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT7530.2335180596602979No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC5490.17025420285989848No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG5130.15908999283629857No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT4500.13955262529499873No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG4250.13179970166749883No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA4230.1311794677772988No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT3350.10388917660849907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)