FastQCFastQC Report
Tue 10 May 2022
EGAF00003642457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18657
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTCCTGCAGCCAAGAA450.241196333815726No Hit
CCATATAGCTACGGGAACCTAGTCCATATCGCTTTCACTCTCGCTCTCAC450.241196333815726No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG420.22511657822801096No Hit
GTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGCCGTGACGGCCAG400.21439674116953425No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG380.2036769041110575No Hit
ATCTTTAACAGTCCTCCTCTCTTTTTTGAATCAAGGGTTCCAGTTAAGCT350.18759714852334244No Hit
GTACATGGGAGCGCGGCTCAGCCATGAGCAACAGGAGTAGCTTTTCCCGG290.15543763734791233No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA270.1447178002894356No Hit
GTACATGGGAGTGCGTCCTACAGATACCACAACCTGGATCAGGTCCAAGC270.1447178002894356No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT260.13935788176019723No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG260.13935788176019723No Hit
TATCAACGCAGAGTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGC260.13935788176019723No Hit
GTATCAACGCAGAGTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCG250.1339979632309589No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT250.1339979632309589No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT250.1339979632309589No Hit
GTATAGCATACCTGGATCTAAAGCGCGACGAGTGCTCTCGGCTCTTCCCG240.12863804470172052No Hit
GTACATGGGTCATCTTCTTCTACGTGCTGGCCAAGGGCTTCGAGATGGCC230.12327812617248218No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220.11791820764324383No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT210.11255828911400548No Hit
CTGTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTTCCGCTGA210.11255828911400548No Hit
GTACATGGGACAGGCGTCATACTTCCCAAGAAGCGGCCATAGCCCAGATG200.10719837058476712No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG200.10719837058476712No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT190.10183845205552874No Hit
CCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGA190.10183845205552874No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA190.10183845205552874No Hit
GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT190.10183845205552874No Hit
GTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTTCCGCTGAGA190.10183845205552874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)