FastQCFastQC Report
Tue 10 May 2022
EGAF00003642533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383918
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC5630.1466458983428753No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC4860.12658953213967566No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA4850.12632905985132242No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG4050.10549127678306305No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC4030.10497033220635656No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT3920.1021051370344709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)