FastQCFastQC Report
Tue 7 May 2024
EGAF00003642693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54267
Total Bases7.5 Mbp
Sequences flagged as poor quality0
Sequence length140
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC1180.21744338179740913No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA800.14741924189654854No Hit
GTGCAGGACTGAGTCAGGACTCCCACGCTGGCCAGGCAGCCCTGCTCACA710.13083457718318683No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT700.12899183665947997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)