FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003642793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115
Sequences flagged as poor quality0
Sequence length140
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTTAGCCGTTCGACCATTTCAAATGCAGGTCGATATTGCCCTTGACC32.608695652173913No Hit
CACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTTTGCCC32.608695652173913No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.7391304347826086No Hit
CTGTGGACGAGCGCGGCAGGCCGCTGTAGCCCGTGCCCGTGCTGCCGTAG21.7391304347826086No Hit
GGCTCCCGTCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGG21.7391304347826086No Hit
GAATCATCATCGGATGGAAACGAATGGAATCATCATCGAATGGAAATGAA21.7391304347826086No Hit
AGGTAGGATGCCGGCCTCAGCCAGGAGACAGAGGTTGCATGAGCCGAGAT21.7391304347826086No Hit
ACGCAGAGTACATGGGAAGCATTGGTATCAACGCAGAGTACATGGGCAGT21.7391304347826086Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA21.7391304347826086No Hit
GTTTAGAGATCGGAAGAGCGTCGTGTAGGGCCTGTCTCTTATACACATCT21.7391304347826086Illumina Single End PCR Primer 1 (95% over 24bp)
GCCGACGAAAAAAAAAGTGTAGATCTTCGGTGGTCGCCGTATCATTCCTG21.7391304347826086Illumina Single End PCR Primer 1 (95% over 21bp)
GAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCA10.8695652173913043No Hit
ACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
ACATTTCCCTGCATTCCTGGCAGGTAGGCATGCCTGTGTAACTAAGTCCT10.8695652173913043No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCCTGTCTCTTAT10.8695652173913043No Hit
GCAAGACTTCATCTCAAAAAAGAAGAAGAAAAAAAGAAAGAAAGAAAGAA10.8695652173913043No Hit
ACCTTGGCTCACTGCAACCTCCTCCTGGATTCAAGAGATTCTTGTGCCTC10.8695652173913043No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
GAAACAAAGTACGGGAATATTAACCCGTTTCCCATCGACTACGCATTTCT10.8695652173913043No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTT10.8695652173913043No Hit
GAAGTATTGTGAAAAATATAGCACAAATAGTAGTAAAGCTGTCTCTTATA10.8695652173913043No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATTGCGACT10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
GCTCCAAATATCCACTTGCGGATTCTACAAAAAGCGAGTTTCAAAACTTC10.8695652173913043No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACAAGGCCGT10.8695652173913043No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTT10.8695652173913043No Hit
TCCAAATAGAGCTCAGCCAAATCTAAGCCTCCAGTCTGTGGCCAGTTCTA10.8695652173913043No Hit
TCACCCAAGAGCTGGAGATGTACAAGGAGATTAATGTTGCTTGCATGCCT10.8695652173913043No Hit
GTTTGTTACCATTCCAATTTTGCTGAGCAGTTTGGGGTTTTGACATTACA10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGGACTCTCCTACACACAGCAACTCCAGTCC10.8695652173913043No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTGATTAT10.8695652173913043No Hit
AGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCGACAAGAGCGAAGCTC10.8695652173913043No Hit
GGTATCAACGCAGAGTACATGGGCGGGCGGTTTCACTCACAGCCGCTTCG10.8695652173913043No Hit
GGATGGAGAAGGACTGCTGGATTCGACCAAGTCAAAGGACTCTCTGTTTG10.8695652173913043No Hit
GAGTTTGCCCAGGGTGGGCTCCAGCGCGGTCCAGACGGCGGCCTGTCTCT10.8695652173913043No Hit
CGACCACCGAGATCTACCTCTTTTTTTCGTCGGCAGCGTCAGATGTGAAA10.8695652173913043No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTATTTACCTTT10.8695652173913043No Hit
CCACTACTCTTCCTACACGACGCTCTCCGATCTCTGGTACCGACAGAATC10.8695652173913043No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT10.8695652173913043No Hit
CTACTTCCCCTCTGAAAAAAAACAAGTAAAATTTTACTTTAATTATTTGT10.8695652173913043No Hit
CTCCACAATGTGGGAGCGGGCTCAAGCATAGGGGCTCAAGGGCCCTGTTA10.8695652173913043No Hit
GAATGATACGGCGACCACCGAGATCTACCTTTTTTTTTCGTCGGCAGCGT10.8695652173913043Illumina Single End PCR Primer 1 (96% over 27bp)
GAGTTGAACGATCCTTTACAGAGAGCAGACTTGAAACACTCTTTTTGTGG10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCAAACGAGATCTTG10.8695652173913043RNA PCR Primer, Index 28 (96% over 27bp)
GGAACAGTCAATGAACTCGAATGGAATCATCATTGAATGGAATCGAATGG10.8695652173913043No Hit
ATCCTACCCAACGAAAATCAGAAAACATGTACACTGCCCATGAACTCAGC10.8695652173913043No Hit
GAATGTAATGTAATGTAATGTAATGGAATGGAATGGAATGGAATGGAATG10.8695652173913043No Hit
TATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCTACGAGATCCTGAG10.8695652173913043No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCC10.8695652173913043No Hit
GGCAGCGTCAGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGTACTCTG10.8695652173913043No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGAAGT10.8695652173913043No Hit
CTGTGCTCCCCAACACATCAGATTGGCCACCCTGCAGGCCTGTCTCTTAT10.8695652173913043No Hit
GTACATGGGGTTTCCTCAGCAACTCCAGTCCTTGCATCATGAGATCGGAA10.8695652173913043No Hit
AATCCGTTCTAACACCCGCGGCAGCTGCACGGGCTCACAGAAGGCTGTCT10.8695652173913043No Hit
GGTATAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACTATGCGT10.8695652173913043No Hit
TCGCACAGGCGCACGAAGCGGGCCGCCTTCTCGGAGGCGTCGATGTCGAG10.8695652173913043No Hit
AAAAAAAAGTGTAGATCTCGGTGGTCGCCCTGTCTCTTATACACATCCTC10.8695652173913043Illumina Single End PCR Primer 1 (95% over 24bp)
CCGACATCCTCATCTCTTAAAAGGACACCAGGGTGTCTATACCAAAGCTG10.8695652173913043No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTACCA10.8695652173913043No Hit
ATCATCGAATGTACTCGAATGGAGTCATCATCGAATGGAATTGAAAGGAT10.8695652173913043No Hit
AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTCTGTCTCTTA10.8695652173913043No Hit
TCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCTGAGTAGCGGGGATT10.8695652173913043No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGGTGCAT10.8695652173913043No Hit
TGGATGAAGTGTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTC10.8695652173913043No Hit
ACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAAATAGTATTTTT10.8695652173913043No Hit
CGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGTCAGGAGAATCTCATGAA10.8695652173913043No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAA10.8695652173913043No Hit
GGATCATTAGTGCCTACTATGAGCAACTACATGCAAATAAATTGGAATAT10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGGTCTCGACTTGTTCTGGTGCAAAATAAAT10.8695652173913043No Hit
CTTTTCCACAGATCAGACTTGAAACACTCTTTTTGTGGAATTTGCAAATG10.8695652173913043No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.8695652173913043No Hit
GATCTACACTTTTTTTTCGTCGGCAGCGAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
GCTCCAAATATCCACTTGCGGATTCTACAAAAAGCGAGTTTCAAAACTGC10.8695652173913043No Hit
TATCAACGCAGAGTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAA10.8695652173913043No Hit
GTTCATAGGATGTTAACGGCGGTTAATACATAGATCGGAAGCTGTCTCTT10.8695652173913043No Hit
CATAGAAACAGGGGTTTTGTCTGTCTTGTTAACTTCTGTATCCCTTCCTC10.8695652173913043No Hit
GCACACGTGTGTAATTGAGTAAAATGGCAAGTTGTTGAGTTTTTTTTGAT10.8695652173913043No Hit
CTTTGTGATGTGTGCATTCATCTCACAGAGTTGAAACTTTCTTTTGATTG10.8695652173913043No Hit
ATCGGAAGAGCGTCGTGTAGGGAAGGTTACACGCAAAAAAAAAAAAAAAA10.8695652173913043Illumina Single End PCR Primer 1 (96% over 26bp)
CTACTTTTGCCTGTGACATTTCCCCCATCATGCTTTGAATAGGTCCTTAC10.8695652173913043No Hit
GTTCCCATGGTCTTGGGTAGCTCCGCCTCTGTGGCTTTGCAGGGTACAGC10.8695652173913043No Hit
ACTGAGGAGGCTGAGGCAGGAGAATGGAATGAACCCGGGAGGTGGAGCTT10.8695652173913043No Hit
GATTCGGTGGTCGCCGTCCCATGTACTCTGCGTTGATACAAGCAGTGGTA10.8695652173913043No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTAAAAAAAAAAA10.8695652173913043No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
AATCAACGCAGAGTACATGGGAATGATACGGCGACCACCGAGATCTCTGT10.8695652173913043Illumina Single End PCR Primer 1 (96% over 25bp)
GTATCAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAATG10.8695652173913043No Hit
GGTATAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAGTGCGTT10.8695652173913043No Hit
GGGTCTCTTCTTCCTTTGCTGTAGCTGGAACACTGTCTCTATCTAGTAAG10.8695652173913043No Hit
CATTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCCTGTCTCTTA10.8695652173913043No Hit
CGTCAGATGTGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAC10.8695652173913043No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTCTGTCTCTTAT10.8695652173913043Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGCATGCCTGTAATCCCAGCTACTCAGGAGGCGGAGGCAGGGG10.8695652173913043No Hit
ATCTACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8695652173913043No Hit
AACCAAAACTAAACTCATCCCAAATAACAATAAGTAGATACCCTGACTCT10.8695652173913043No Hit
TATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA10.8695652173913043No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTT10.8695652173913043No Hit
GGCTTGTACAATTGAGTGATGAAGGCATTCACTATGTTACAGAATGCTGG10.8695652173913043No Hit
ACTTTATTGAAAGGAAAGTGCAATGAAATTTGTTGAAACCTTAAAAGGGG10.8695652173913043No Hit
GTATCAACGCAGAGTACATGGCGGCGCGGTGGCTCACACCTGTAATCCCA10.8695652173913043No Hit

[FAIL]Adapter Content

Adapter graph