FastQCFastQC Report
Tue 10 May 2022
EGAF00003642813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446183
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT7820.17526440944634825No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT7430.16652360130260455No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA6800.1524038343011724No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC6430.14411127272890273No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG6120.13716345087105516No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT4630.10376908129623943No Hit
GTATGAGAAGATGGCAGAGAAGAACCGCAAGGATGCCGAGGATTGGTTCT4550.1019760950103433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)