FastQCFastQC Report
Tue 10 May 2022
EGAF00003642964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24213
Sequences flagged as poor quality0
Sequence length140
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG510.21063065295502414No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA400.16520051212158757No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG380.1569404865155082No Hit
CTCTTACTCTCTAGGCCACGGAATTAACCCGAGCAGGCATGGAGGCCTCT370.1528104737124685No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC360.14868046090942882No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT350.14455044810638912No Hit
GAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGT350.14455044810638912No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA340.14042043530334944No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT300.12390038409119067No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT290.11977037128815099No Hit
ATTCTAATGTGAACCATGGCCCTGAAAGCTGATAACAAGCTTGGCTGAGC280.11564035848511131No Hit
GTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTT280.11564035848511131No Hit
GCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCCTTCTTTG270.11151034568207162No Hit
ATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCCTTCTC260.10738033287903193No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT260.10738033287903193No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC260.10738033287903193No Hit
GTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAAT260.10738033287903193No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG260.10738033287903193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)