FastQCFastQC Report
Tue 10 May 2022
EGAF00003642969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003642969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244427
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT7030.28761143408870543No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG5280.21601541564557108No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA5100.20865125374856297No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC4500.18410404742520262No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA4180.17101220405274375No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG4130.16896660352579707No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT3690.15096531888866616No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA3590.14687411783477275No Hit
GTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA3500.14319203688626872No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT3480.14237379667549002No Hit
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT3250.13296403425153522No Hit
GTGTTATCCATGTATTTGCAACAGCAGAGAAACAGTGACAGTGGACCATC2940.1202813109844657No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT2880.11782659035212968No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC2770.11332626919284695No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2620.10718946761200687No Hit
CTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTATTCCAAACCA2530.10350738666350282No Hit
GTACATTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAA2500.10228002634733478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)