FastQCFastQC Report
Tue 10 May 2022
EGAF00003643016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16248
Sequences flagged as poor quality0
Sequence length140
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAGACAATGGACCTGAGACCATGCGTATGTCCCGAGGCGGCT480.29542097488921715No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC470.28926637124569177No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT430.26464795667159036No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG410.2523387493845396No Hit
CAATGGACCTGAGACCATGCGTATGTCCCGAGGCGGCTGCTCCGGTCTCT320.19694731659281145No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG310.19079271294928607No Hit
CCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCACGTTGCGAGTC290.17848350566223536No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG280.17232890201870998No Hit
CATATGCAGATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCG270.16617429837518463No Hit
ATTATTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTT270.16617429837518463No Hit
GTATGTGACCCTAGTTTCTTTACTGTTACTTTCCTTTTGGTCATGCTACA270.16617429837518463No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG260.16001969473165928No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA260.16001969473165928No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT250.15386509108813393No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA250.15386509108813393No Hit
GTACATGGGAAGGTGCTTCAACCCACTGTCTTCCCCGTGGTTCCAAGACT240.14771048744460857No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT230.14155588380108322No Hit
GATCCAGACCGTCGGCTGATCGTGGTTTTACTAGGCTAGACTAGCGTACG230.14155588380108322No Hit
GTACATGGGATCCAGACCGTCGGCTGATCGTGGTTTTACTAGGCTAGACT220.13540128015755787No Hit
GTATCAACGCAGAGTACATGGGATCCAGACCGTCGGCTGATCGTGGTTTT220.13540128015755787No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG220.13540128015755787No Hit
ACCTGAGACCATGCGTATGTCCCGAGGCGGCTGCTCCGGTCTCTTGCGGT210.1292466765140325No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT210.1292466765140325No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA210.1292466765140325No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT200.12309207287050715No Hit
GGTAAAACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGAG190.11693746922698178No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA190.11693746922698178No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA190.11693746922698178No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA180.11078286558345643No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC180.11078286558345643No Hit
TCCTCAGACGCTGCCCTAACTGCGCAGTTAATAATTCTGGCAATTCGTCT180.11078286558345643No Hit
GTATCAACGCAGAGTACATGGGAGACAATGGACCTGAGACCATGCGTATG170.10462826193993106No Hit
CCTGAGACCATGCGTATGTCCCGAGGCGGCTGCTCCGGTCTCTTGCGGTG170.10462826193993106No Hit
CCTAAAGTATGCTGCAAACATATGCAGATCCCCTGAGACAGAGTCGCTAT170.10462826193993106No Hit
ACCTACGAGGGCGGTGTCCGAGAGCCTGCCTTGGCCTTCTGGCCAGGTCA170.10462826193993106No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT170.10462826193993106No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT170.10462826193993106No Hit
ACCTAAAGTATGCTGCAAACATATGCAGATCCCCTGAGACAGAGTCGCTA170.10462826193993106No Hit
GCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGC170.10462826193993106No Hit
ACGCAGAGTACATGGGATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG170.10462826193993106No Hit
CCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCGCGGTCAAGGCGA170.10462826193993106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)