FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAGAAACATGGACAGCATCTCCCCCAGCAGCAGGCAGGGGAAGGGAG33.0No Hit
GGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCG33.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA33.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTCTGATACTTGTCCTTGGAGAATAGGCAGGTAAATTCTTGGCAGAAATC33.0No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG33.0Clontech Universal Primer Mix Long (96% over 26bp)
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC33.0Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTGGATAGGGGCACATTAAGAAATCCCAGAGGGTTCAGATCTATAGG22.0No Hit
TCCTGCACCTGCTTGCTGACGGCGCCCTGCGTGAGGTGCAGCGCCTCGGC22.0No Hit
GCAGAATCCTCAGCCCATGACGCCCCCATGGTGATACCAGCCTAGAAGGG22.0No Hit
CCTGTATATCATCTCCGTGAAGGGGATCAAGGGACGGCTGAACAGACTTC22.0No Hit
CTATCCAGCTGGGGGCACCGAGACGGCCTCATTCAGGGAAGTCCAGGATG22.0No Hit
GCACTGGCACAACCTTGGTTCACTGCATCCTGAACATTCTGGGCTCAAGC22.0No Hit
CCACCCTACTTCCTGTTCCAGATGCGGGTGGACGGGCACTCCTGAGCGAC22.0No Hit
CAGGGACCCCGTACGACGTGGCGATGACTCATCGCCCGCATGCCGCACTA22.0No Hit
GTCCAGGATGGCAGCTGAAGGCAGCAGGTTTAGCAGCCAAAGCCCAGGCC22.0No Hit
GTATTCGTTGGACCATCTGCAGTAGCATTTTCTAACGAAGATGTTATCGC22.0No Hit
CCTGCCCCGCTCGGTCAGTCAGTCGGCGGCCGGCGCCCGGCTTGTGCTCA22.0No Hit
CCCCAGCTCGCCGCCAAACTCCTCGTCGTAGGTGAGGTGCAGCTCCACTG11.0No Hit
CCACTGGGCAGTTGGGGTGGCTTCCTGGGAGATGAGCCGCGACCAGGTCC11.0No Hit
AACGTCTCCATTGCGGTCCCAGGCTTCCAGAACCGTTTCCAGACGCTGCA11.0No Hit
CTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAGGATGG11.0No Hit
GCATTGGTCACCAGCTCATGCACCACCAGCGCCAGCGCGGTGAAGGCGCT11.0No Hit
CTATAAAAATTTGTATACGTGTCACAGCAGGAAAATCTGTGATTCTTTTT11.0No Hit
GAAGTGGACACTAGGAATTGCAGCCACTGGGCAGTTGGGGTGGCTTCCTG11.0No Hit
GGCGGGCCGCTGGTTTCGATATCGTCTTGTCGAACAACGCCCCGAACACG11.0No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC11.0No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG11.0Clontech Universal Primer Mix Long (96% over 26bp)
CTCTTGAACAAGTTGAATTTTCAGGTTTTCTCCAAGGAGGCTGCTTGAGC11.0No Hit
GGACGGCGTCGGGCTCGCCGAGGGCCCCGTCGAAGCCGGAGTAGGCGTCC11.0No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.0Clontech Universal Primer Mix Long (96% over 26bp)
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG11.0Clontech SMARTer II A Oligonucleotide (100% over 23bp)
ACCTGATAAGGTAGCAACCTAATTTAAAGCAATATGAGGGAAGTGACTTT11.0No Hit
CATGTACTCTGCGTAGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTCTTAGTAGATGGCCCAGGAAGGTGGTGAGGGGAAGGAAGTATATGCCA11.0No Hit
CCGCATCTGCCTCATTCCGCGAGGAATCGGCGACGCGTGAACACGCTGTC11.0No Hit
TTACAGGCATGAGCCACTGCTCCTGGCCCAAAACCCCCAGACTTTTAAAA11.0No Hit
ACATGGGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCGAC11.0No Hit
GGCCTCATTCAGGGAAGTCCAGGATGGCAGCTGAAGGCAGCAGGTTTAGC11.0No Hit
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGAGTGT11.0No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG11.0Clontech Universal Primer Mix Long (96% over 26bp)
TGTTCTTGCTGTGCTTCTCGTTGGCCATACGGATCCTTTGCTTGGCGACC11.0No Hit
GTACATGGGGCCATCCATCCAACCTTTAACTTGAAGAGCCTTTCCTGCAG11.0No Hit
GAACAACCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCGATTATAACA11.0No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.0Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTATCTGCAGAATCCTCAGCCCATGACGCCCCCATGGTGATACCAGC11.0No Hit
GCATCACAGTTTGAGGCCCTTCCTGCCCAATCCTGCGGGGTTTCCCTTTG11.0No Hit
ATTCAGGGAAGTCCAGGATGGCAGCTGAAGGCAGCAGGTTTAGCAGCCAA11.0No Hit
ATTTTGGATCGCTTTGACTTCTCCAACACGGTTTGGCATCTCTGAAACCT11.0No Hit
TCCCTGAACCCCAATTTCCTCATCTGTAAATGGGACAATAGTGTCTATTT11.0No Hit
CTAATGGGAAATGTTTAGGTCATGAGGACTCTGCCTTCATGAATGTACTA11.0No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTCTGT11.0Clontech Universal Primer Mix Long (96% over 26bp)
CCCCAGGAAATGGCATATCATGTGAGCCCCATGAGGTACAGGCTGCAGTG11.0No Hit
TCTCCCAGGAAGCCACCCCAACTGCCCAGTGGCTGCAATTCCTAGTGTCC11.0No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.0Clontech Universal Primer Mix Long (96% over 26bp)
GCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCT11.0No Hit
CTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT11.0Clontech SMART CDS Primer II A (96% over 26bp)
TGCCAGGCCTGGGACTCACCCTTCAGGGCAGTAGGCCCCCCCTCTGGCCT11.0No Hit
ACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGA11.0No Hit
GTTTATCCCTGTGAAAAGACCCATCCCCCATCCAGCCTATAATCCTAAGA11.0No Hit
ACAGACGCCTTCTCTTCGGGGGCATTTCTCGAGGTCTTGGCGACGTTGCC11.0No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC11.0No Hit
GTCCAAGGATTCCCGTACAGTGACTGTGTCTCACCGCCCACAACCCTATC11.0No Hit
TCCTACGCCTTTGAACGCCACAAATCAGAGATGGTACCATGGAGGAACAT11.0No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT11.0Clontech Universal Primer Mix Long (96% over 26bp)
GGCTGGACTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTCCCA11.0No Hit
CATCAGCTGGTTTCCTGCCCTACCACTTCTCTAAGCAGCTCTCCCTGCCG11.0No Hit
GGGGGACCACACCAGACGTTCGAGTACGGATCGAGCTTTGGAGCCAGCCG11.0No Hit
GTCTCGATCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGC11.0No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG11.0Clontech Universal Primer Mix Long (96% over 26bp)
TCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGC11.0No Hit
TTCCACAGCAAGGACCGCCACACGCTGACGCTGCTGCTGACCTTCGGCCT11.0No Hit
GTTTTCTATTGCCATGTAACAAATTACCATAAACTTAGCAGCTTAAAACA11.0No Hit
GGTCTGCGCTGAGTGCTCGCGCCAGCGCTTCCTGCTCCCGCGCCTGTCCC11.0No Hit
ATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAG11.0No Hit
CCTTGGCTCAGACAGACCTGGGGTGGTGGGCATCTGGCTGAACCTTGAGG11.0No Hit
ATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAGAAGC11.0No Hit
CTCACTCGCCTGCCTCCTCTGGAGTCGCTGCGAGGCTCGGCTCGTGGTGC11.0No Hit

[OK]Adapter Content

Adapter graph