FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCATATTTTGCCTATTGCTTATTACTTTCCTTAATGTTTGAAATCTATG36.0No Hit
GCGGCGGCCGGCCTGCTCGTCGGTCTCCTCCTGTCCGCCGTCCTGCTGGC24.0No Hit
TGGGTATCCAGCCCATCATCGCGACCCTGATCCTCATGACGGCCGGACGC24.0No Hit
CCATTGGCCCGACCCACCGCGCGGAACGCGCTCTTGCTGGTGTAGAACCG24.0No Hit
GAGCGGCAGCCCGTCGAGGGCCTGGAGGATCCGGGCCTGGGTCTGGGGCA24.0No Hit
TTGCTGGGGCTGAGGGATTGATCTCTGGGTCTTCTTTTGGGGTTATTTTT24.0No Hit
CGCTGCCACTGGGCGGCTGTCTCACCACCGAGGACATGGCGGTTCTTGAT12.0No Hit
GATGTCGAACGTACCGCCGCCCAGGTCATAGACGGCGTAAATGCCTTCGG12.0No Hit
GTGCAAGGTGGGGGAGGTTTTCCTCCATACAGCCAAGAATCTTGGTGGAA12.0No Hit
GCTTCCAGTTAATTCGTACACCAACCCTTAAGAGTCATGGGTCAAGGCCA12.0No Hit
TCACCGCGCTGGTGATGCTGCGCAAGCAGATCATCGAGGACATCTACCAG12.0No Hit
CTACTGGATAACTCTTCCTGGAAGGTAGTGCGCCCTCTCTCTTTCATATG12.0No Hit
GTTCCATCTTGTCGCTGCCTCGCTGCAGCGCGAAGCGCGAGGTCGTGCCG12.0No Hit
GAATGGAATGGAATGGAATCGTTCCGAGTGGACTAGGAGGGAATGTATTC12.0No Hit
ATCGCATCCGCTCGCCGGCACTGGCGCGGACCTCGTCGGCGGCCTCGGCT12.0No Hit
GTCTTTCCCTGGGGCTCTGTCCCTCCACAGTCGACTCGACATCCTGGTTC12.0No Hit
CAGCTAACAGAGGTGGATCTTTCTTTTGATAGAGCAGTTCTGAAAAACAC12.0No Hit
GGGCACCTACGGACCCCAGACGGGGGTCAAGACCAAGATCGGCGCCGGCA12.0No Hit
GGTCTTGCTTCCCAGGCTAGTATGCTGGTTGCCATAAAATGTGTCAGACA12.0No Hit
CTCCAATGTGATGGGTTTGGTTTTGCTGACCGCCTTGGTCTTGCGGTCCA12.0No Hit
ACGTTGGACGGCACCTCGGCATCCGCCTGCGGACGTTTACGGAGGTCGAG12.0No Hit
GGCCAAACACCGGGTTGCCGCCTGCCAACGCTACGCCAGAGACGTGCGGC12.0No Hit
TTTCCAAGTCAGTTCAAATAAAGACATCCTTGCAAGTGGAGTCTCCCAGG12.0No Hit
GCGGGCCAACGGCGTCGTCGACATCGTCGTTGCCGACGAGGCGGCTGCGG12.0No Hit
GGCCAAACACCGGGTAGCCGCCTGCCAACGCTACGCCAGAGACGTGCGGC12.0No Hit
ACAAACATATGAAAAAAATGCTCAACATCACTAATGATCTCGGAAATGCA12.0No Hit
TGTCGTCTACACGCCGGTCGATGCACCGAGCATGCGGAAGCTGAGGCTGC12.0No Hit
GATCATGCAGTCACTGACCCGCACCAAGGCGGTGGTCGACAAGATGTACA12.0No Hit
GTTTTGTTGTTGTTTTGTTTTGTTTTGTTTTGAGACAGTGTCTTGCTCTG12.0No Hit
AGAGGATACATTTCAATTAATCACTTTGTTTATTGTCTGTCTCTCCTCAT12.0No Hit
AGGCGGTGTTGAGGCTGACCTCGGTGGCGATCTCGTGCGGGGTGTCCTTG12.0No Hit
CCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGCTGCTT12.0No Hit
TTGCCTTTCATAGAGCAGGTTTGAAACGCTCTTTTTGTAGTATATGGAAG12.0No Hit
ATTCCCTTCCATTCGATTCCATTCCATTGGAGTCCGTACCAGTCGAGTCC12.0No Hit
GTCCAAATATCCAGTTGCAGAATTTACAAACTGACTGTTTCCAAACTCAT12.0No Hit
CTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCATTTGCTTGTCT12.0No Hit
GCCGCAACCTCAACTCGGCTGACGCGCCTTACGCCTTCACCTTCGATGTC12.0No Hit
ATGTTAGCCCCAGGGATTGCAAGGAAACAAGCCAAATGGAGCTTATAGTC12.0No Hit
CCCGGCTGAGTACCTAAAATGGCATCACGAAGGCCAGATCAGGCACAAAG12.0No Hit
CTGACGGGGCTGGCGATGCGCAGCGGATCCAACCGGATGGCGATGCGGGC12.0No Hit
GAGGAGATTCTGAGACTAAAAAACTTACCGTGAGATTACCTAGCTAAGGA12.0No Hit
GAGGAATGGAATGGAAAGGACTGGAATGGAGTGGAATGGAATGGAATCAA12.0No Hit
GCAATCCACTTGCTACAGATGGACTGAAAATCTGACTCTGAGATTTCTAA12.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)