FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4029
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAG70.1737403822288409No Hit
ATGGAGGACAGAGGAAAGGGAGATGCAGCCAGTTCAGATCTTCCCGGGAA60.14892032762472077No Hit
GATCTTGGTCATGGAGCCAACCCCAGCGCCACCCCGGAGGTACAGGTGCC60.14892032762472077No Hit
GGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATG50.12410027302060064No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT50.12410027302060064No Hit
GCGTAAGGCTCAGGAACAGCAGGTAAAGCTGGCTGGCCTCCCAGAATGTG50.12410027302060064No Hit
AGTCTGAGTGGAACCCTGGACGACTTGCAGAGCGGCTGGCGCAGTCATGG50.12410027302060064No Hit
CAGCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACTT50.12410027302060064No Hit
GGAATGTACAGTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGC50.12410027302060064No Hit
CCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGAT50.12410027302060064No Hit
GTCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATG50.12410027302060064No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.12410027302060064No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)